BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC50ZD04RM1.SCF screened BAC_end (900 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig729 1068 0.0 >3x_Contig729 Length = 2040 Score = 1068 bits (539), Expect = 0.0 Identities = 560/566 (98%), Gaps = 1/566 (0%) Strand = Plus / Plus Query: 332 acacaccatagtggtacctcaagcagataggttcaaagaacctaaattccaaagaggtct 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 acacaccatagtggtacctcaagcagataggttcaaagaacctaaattccaaagaggtct 60 Query: 392 acgtgcaccaacgatatcgacatcattgatggttactgtcttagactgtatatgcattga 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 acgtgcaccaacgatatcgacatcattgatggttactgtcttagactgtatatgcattga 120 Query: 452 aataagcaaagcatggtttggcaacgatccggtgaaacgtgaaatatttttcaatgagag 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aataagcaaagcatggtttggcaacgatccggtgaaacgtgaaatatttttcaatgagag 180 Query: 512 acacccaggcggaggtataggtaaaatcacttcttctacaaatctgacgcaattggtacg 571 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 acacccaggcggaggtataggtaaaatcacttcttctacaaatctgacgcaattggtacg 240 Query: 572 ggcaccaaccgattatcaaacaccacagtatcactcttacatggttaagaggaacgagac 631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggcaccaaccgattatcaaacaccacagtatcactcttacatggttaagaggaacgagac 300 Query: 632 gttaacagagactcagtttctttcgctcctaataactttcgattacatacaattctcgcc 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gttaacagagactcagtttctttcgctcctaataactttcgattacatacaattctcgcc 360 Query: 692 taanaacgtcagggtcccaacgtgtctcttacgtgaggaacacaagcgcgcagtccactc 751 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 taaaaacgtcagggtcccaacgtgtctcttacgtgaggaacacaagcgcgcagtccactc 420 Query: 752 aggaactgttcctgaatggtttcgcaggtatttgtaaatagaaactacttttgtcgtttt 811 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aggaactgttcctgaatggtttcgcaggtatttgtaaatagaaactacttttgtcgtttt 480 Query: 812 accctgntttaataggtatacaaattctttaaatataaagctctacggttcaaaactgtg 871 ||| || |||||||||||||||| ||||| |||||||||||||||||||||| ||||||| Sbjct: 481 accttg-tttaataggtatacaatttcttaaaatataaagctctacggttcagaactgtg 539 Query: 872 agcaatcgctgctagccaatttctca 897 |||||||||||||||||||||||||| Sbjct: 540 agcaatcgctgctagccaatttctca 565 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5258 Number of Sequences: 1807 Number of extensions: 5258 Number of successful extensions: 21 Number of sequences better than 1.0e-20: 1 length of query: 900 length of database: 10,358,551 effective HSP length: 16 effective length of query: 884 effective length of database: 10,329,639 effective search space: 9131400876 effective search space used: 9131400876 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)