BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD05FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1459 0.0
>3x_Contig1774
Length = 27771
Score = 1459 bits (736), Expect = 0.0
Identities = 787/800 (98%), Gaps = 3/800 (0%)
Strand = Plus / Minus
Query: 87 gggtcaaatctctgctggtatcgttgctctggttttggttgctgcttacaagggtgattt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 gggtcaaatctctgctggtatcgttgctctggttttggttgctgcttacaagggtgattt 1293
Query: 147 ggaagatgctaccactggtaactgtggtccagcttgtcaaaaggcatgtgatcaaatgtg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 ggaagatgctaccactggtaactgtggtccagcttgtcaaaaggcatgtgatcaaatgtg 1233
Query: 207 gagaatcttgatcggtttgggttgtttaccaggttgtattgctctatacttcagattgac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 gagaatcttgatcggtttgggttgtttaccaggttgtattgctctatacttcagattgac 1173
Query: 267 tatcccagaatccccacgttataccttggatgtcgacatggacttcaacaagggtgctgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 tatcccagaatccccacgttataccttggatgtcgacatggacttcaacaagggtgctgc 1113
Query: 327 tgatgctgctaagtttacttctggtgaacacggtaacgctgaacaagaagaaattgccaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 tgatgctgctaagtttacttctggtgaacacggtaacgctgaacaagaagaaattgccaa 1053
Query: 387 attggaaaaggctccaactgccgttgaaactatggaaatcaagccaccagctgcctcctt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 attggaaaaggctccaactgccgttgaaactatggaaatcaagccaccagctgcctcctt 993
Query: 447 caaggatttcaccagacatttcaaccaatggaagcacatgaagattttgatcggtaccgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 caaggatttcaccagacatttcaaccaatggaagcacatgaagattttgatcggtaccgc 933
Query: 507 tggttcatggttcttgttggatgttgccttctacggtgtttctttgaactccgctgttat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 tggttcatggttcttgttggatgttgccttctacggtgtttctttgaactccgctgttat 873
Query: 567 tttgcaaactattggctacgctagttcttctaacgtttacagaaagttgtacaactctgc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 tttgcaaactattggctacgctagttcttctaacgtttacagaaagttgtacaactctgc 813
Query: 627 cgttggtaacttgattttaatttgtgccggttctttgccaggttactgggtctctgtcgc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 cgttggtaacttgattttaatttgtgccggttctttgccaggttactgggtctctgtcgc 753
Query: 687 taccattgatgtcattggtagaaaaccaatccaattgatgggtttcgtcatcttgaccat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 taccattgatgtcattggtagaaaaccaatccaattgatgggtttcgtcatcttgaccat 693
Query: 747 tttgttctgtatcatttgttttcgcttacgacaagattggtgaccatggtctattaacat 806
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 692 tttgttctgtatca-ttggtttcgcttacgacaagattggtgaccatggtctattagcat 634
Query: 807 tgtacgtcttgtggtcatttttcttcaatttcggtccttacgttacaacccttcattcgt 866
||||||||||||| |||||||||||| ||||||||| ||||||||| |||||| ||||
Sbjct: 633 tgtacgtcttgtgtcaatttttcttcaacttcggtcctaacgttacaa-ccttca-tcgt 576
Query: 867 tctgggtgaatgttttccaa 886
|| ||||||||||| ||||
Sbjct: 575 tcctggtgaatgtttcccaa 556
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6765
Number of Sequences: 1807
Number of extensions: 6765
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)