BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD05RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig534 1693 0.0
>3x_Contig534
Length = 2494
Score = 1693 bits (854), Expect = 0.0
Identities = 870/876 (99%)
Strand = Plus / Plus
Query: 46 tacaagaagtgaagtactcttcacttacgtttaagtcaacggttctcaaatatgattggc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tacaagaagtgaagtactcttcacttacgtttaagtcaacggttctcaaatatgattggc 456
Query: 106 cggatatttcaaatgtccgggtaatactgttgatcttttccctcaaaattttcattgaat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cggatatttcaaatgtccgggtaatactgttgatcttttccctcaaaattttcattgaat 516
Query: 166 tgaaccaaacatgaagagatatcgaactaaagcatcaagtcaagagtcaattgatagaag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgaaccaaacatgaagagatatcgaactaaagcatcaagtcaagagtcaattgatagaag 576
Query: 226 attacaaggtctcacacttctagcttggttggtttagtgtattcaatagataaaagtcga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 attacaaggtctcacacttctagcttggttggtttagtgtattcaatagataaaagtcga 636
Query: 286 gcagcaatgatttccagagtccaatctttagtttcttctttgacacacaagacacaatca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gcagcaatgatttccagagtccaatctttagtttcttctttgacacacaagacacaatca 696
Query: 346 ctgttgaccaagaccgtttactacggtaaggttactgctgaattatccaagcaggtctac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctgttgaccaagaccgtttactacggtaaggttactgctgaattatccaagcaggtctac 756
Query: 406 actaaggaaggtctacagccaccaaacttctcggactttgaaatggtctacaccagattg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 actaaggaaggtctacagccaccaaacttctcggactttgaaatggtctacaccagattg 816
Query: 466 tacagacaagctttgggttatgctgataagcctcaacaagttgttaacttgttgaagaac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tacagacaagctttgggttatgctgataagcctcaacaagttgttaacttgttgaagaac 876
Query: 526 attgaaaaggaccaagccgttaagatcggtgctttcggcgtgcaattgttaggtttatac 585
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 877 attgaaaaggaccaagccgttaagatcggtgctttcggcgtgcaattgtcaggtttatac 936
Query: 586 tcattgggtgaaattatcggtagaagaaaggttgttggttaccgtaactactctactcac 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 tcattgggtgaaattatcggtagaagaaaggttgttggttaccgtaactactctactcac 996
Query: 646 cactaaaaatggaattgattgagaggccgaccgtatcaattttaaaagcatattcagtaa 705
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 997 cactaaaaatggaattgattgacaggccgaccgtatcaattttaaaagcatattcagtaa 1056
Query: 706 catacgaacgaaattttaacaactacaaacaacactatattcatttccagccaagaaaaa 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 catacgaacgaaattttaacaactacaaacaacactatattcatttccagccaagaaaaa 1116
Query: 766 aacaacctaaaaataaagcgactnttactctggtttcccagatgaagtgttaaaagacta 825
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1117 aacaacctaaaaataaagcgacttttactctggtttcccagatgaagtgttaaaagacta 1176
Query: 826 tatatatgtatcgnctatatgtaatatacatacggattctgcgacgctttaattatatgt 885
||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 tatatctgtctcgtctatatgtaatatacatacggattctgcgacgctttaattatatgt 1236
Query: 886 atatcatcatgacttaattcgaacatttgatattgg 921
||||||||||||||||||||||||||||||||||||
Sbjct: 1237 atatcatcatgacttaattcgaacatttgatattgg 1272
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7749
Number of Sequences: 1807
Number of extensions: 7749
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)