BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD06FM1.SCF screened BAC_end
(1000 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1657 1306 0.0
>3x_Contig1657
Length = 14558
Score = 1306 bits (659), Expect = 0.0
Identities = 733/746 (98%), Gaps = 9/746 (1%)
Strand = Plus / Minus
Query: 89 ctctctacagtcctttgtgaacacagtacagcagtcgttgaagacgctctctcatgaaaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13302 ctctctacagtcctttgtgaacacagtacagcagtcgttgaagacgctctctcatgaaaa 13243
Query: 149 cggagaatatttgtacattttgagaagtaaagctaatctagagttccaagcacgtgaggc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13242 cggagaatatttgtacattttgagaagtaaagctaatctagagttccaagcacgtgaggc 13183
Query: 209 tttagagcgacagtaaagagagaaggagaaggcagagtccgcttcgatgaaagcatcaac 268
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13182 tttagagcgacagcaaagagagaaggagaaggcagagtccgcttcgatgaaagcatcaac 13123
Query: 269 tgaattcgaactctcttcctcttccttttcctcttcctctccctccactgcatcttcatg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13122 tgaattcgaactctcttcctcttccttttcctcttcctctccctccactgcatcttcatg 13063
Query: 329 cactgcatcaagtacctctactgcttccttactcgctgtggaaaaaactatcgcactaga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13062 cactgcatcaagtacctctactgcttccttactcgctgtggaaaaaactatcgcactaga 13003
Query: 389 agacctgcaatcctattatcaaaatgtatcaagtacagattctctgtaacgcactgtaac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13002 agacctgcaatcctattatcaaaatgtatcaagtacagattctctgtaacgcactgtaac 12943
Query: 449 atttcccagcatcatctaatgctgtacgtgcagcgtatataataatatagtataatatgt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12942 atttcccagcatcatctaatgctgtacgtgcagcgtatataataatatagtataatatgt 12883
Query: 509 agtttaatgacataactcaactgttaccctccttcggtctgtgcatgtgcaaaattaaaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12882 agtttaatgacataactcaactgttaccctccttcggtctgtgcatgtgcaaaattaaaa 12823
Query: 569 ttaatccgctgtccaaactaaacgagcacatgtccagaaaaggaattttcaacgactaaa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12822 ttaatccgctgtccaaactaaacgagcacatgtccagaaaaggaattttcaacgactaaa 12763
Query: 629 aatcaagtttctccagtaaagtaagaaagacttgccactcagagctcatcgttc-aagga 687
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 12762 aatcaagtttctccagtaaagtaagaaagacttgccactcagagctcatcgttcaaagga 12703
Query: 688 caccanactgttcaaat-aaggcatcgccttgtgaaaaaaaaagttaaaaaaaaaaaaaa 746
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 12702 caccaaactgttcaaatcaaggcatcgccttgtgaaaaaaaaag-taaaaaaaaaaaaaa 12644
Query: 747 actggattaaactgaaaaaaaacgaaaagggttcaatcttaccg-gtatataaaaaggaa 805
||||||| |||||| ||||||||||||| ||||||||| ||||| |||||| ||||||||
Sbjct: 12643 actggataaaactg-aaaaaaacgaaaa-ggttcaatc-taccgagtatat-aaaaggaa 12588
Query: 806 cagaaacccatttgggcaattacgtt 831
||||||| ||||| ||||||||||||
Sbjct: 12587 cagaaacacattt-ggcaattacgtt 12563
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,743
Number of Sequences: 1807
Number of extensions: 17743
Number of successful extensions: 2357
Number of sequences better than 1.0e-20: 1
length of query: 1000
length of database: 10,358,551
effective HSP length: 16
effective length of query: 984
effective length of database: 10,329,639
effective search space: 10164364776
effective search space used: 10164364776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)