BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD06RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig515 904 0.0
3x_Contig1706 559 e-159
>3x_Contig515
Length = 1717
Score = 904 bits (456), Expect = 0.0
Identities = 528/543 (97%), Gaps = 7/543 (1%)
Strand = Plus / Minus
Query: 417 gatgtcgaagaaaaatttgagaaatgatgattgtgctagcgttattgactgcattgaatg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1717 gatgtcgaagaaaaatttgagaaatgatgattgtgctagcgttattgactgcattgaatg 1658
Query: 477 gcttgaaatcttttgcagtgaactaaactaccgtgtacatgacttagaacaagaatatga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 gcttgaaatcttttgcagtgaactaaactaccgtgtacatgacttagaacaagaatatga 1598
Query: 537 aaaggtaataatgccaagaacaattgttatcatgattaagggcaaagcaggcatgaaata 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 aaaggtaataatgccaagaacaattgttatcatgattaagggcaaagcaggcatgaaata 1538
Query: 597 tactcaaacccgaagaatcactaccgcttcaagtagtataacgtccagagagttattcat 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 tactcaaacccgaagaatcactaccgcttcaagtagtataacgtccagagagttattcat 1478
Query: 657 caatgcaacaaaattgataaacgagattgantaagc-acatggcaagcttgccggtgttt 715
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1477 caatgcaacaaaattgataaacgagattga-taagcaacatggcaagcttgccggtgttt 1419
Query: 716 accctttgagagaactctcgttgactctttccaattttgatataatagacaaagggaaaa 775
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1418 accctttgagagaactctcgttgactctttccaattttgatataatagacaaggggaaaa 1359
Query: 776 ctgtccttgatatgttcnggtatcgagcaatctcaaaat-atctttaactgataac-acg 833
||||||||||||||||| | |||||||||||||||||| ||||| |||||||||| |||
Sbjct: 1358 ctgtccttgatatgttcggtaatcgagcaatctcaaaatcatcttcaactgataacaacg 1299
Query: 834 tcgtaaagatagaaggtg-agacctacattcagattc-aaaggtggcccttatgatgcgt 891
|||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 1298 tcgtaaagatagaaggtgaagacatacattcagattcgaaaggtggcccttatgatgcgt 1239
Query: 892 ctgtttcagagaccctcgaggggagaaccaccaagtgcttcttttcctcctacaatggct 951
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1238 ctgtttcagagacactcga-gggagaaccaccaagtgcttcttctcctcctacaatggct 1180
Query: 952 gaa 954
|||
Sbjct: 1179 gaa 1177
>3x_Contig1706
Length = 16303
Score = 559 bits (282), Expect = e-159
Identities = 282/282 (100%)
Strand = Plus / Minus
Query: 51 ttctaattacaagaaacccaatgcgcaaaccattgtaaagaacaactgtatagatgattt 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttctaattacaagaaacccaatgcgcaaaccattgtaaagaacaactgtatagatgattt 237
Query: 111 ccttgattgcgggaagtttgaaatcaattccttttggacattgggtggcatacgtggaaa 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ccttgattgcgggaagtttgaaatcaattccttttggacattgggtggcatacgtggaaa 177
Query: 171 ggaattaattgatttgatggaacttcccaaagaacattctataaagttcattagagattc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ggaattaattgatttgatggaacttcccaaagaacattctataaagttcattagagattc 117
Query: 231 atggccagtttcaagcgatgacatcagaaaattcatgctcaagaaaatcatatgcagaga 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 atggccagtttcaagcgatgacatcagaaaattcatgctcaagaaaatcatatgcagaga 57
Query: 291 tatacaaaggtctagagagtacaacattaatgaagccgatgt 332
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 tatacaaaggtctagagagtacaacattaatgaagccgatgt 15
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7324
Number of Sequences: 1807
Number of extensions: 7324
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)