BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD07RM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1046 1612 0.0
>3x_Contig1046
Length = 3637
Score = 1612 bits (813), Expect = 0.0
Identities = 842/851 (98%), Gaps = 1/851 (0%)
Strand = Plus / Plus
Query: 46 tttgttttagtattcttgtcctctccccaatcaacagataccaatacatacacaaatctt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tttgttttagtattcttgtcctctccccaatcaacagataccaatacatacacaaatctt 474
Query: 106 ctacctcagcctctagtatcctgaaattatcatgcttcatcagttttgggttttggcagc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ctacctcagcctctagtatcctgaaattatcatgcttcatcagttttgggttttggcagc 534
Query: 166 tgcctttacactatcgtcatcagcatttgctgatgactatgaatcatccactacgcgaac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tgcctttacactatcgtcatcagcatttgctgatgactatgaatcatccactacgcgaac 594
Query: 226 tttattccccaccaatatcagcggtattgatccaattgctaaacaaagagatgttttgta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tttattccccaccaatatcagcggtattgatccaattgctaaacaaagagatgttttgta 654
Query: 286 tactgaaccagaggaaaacaccatcactgttggcgaagtttaccaaaatgtggctgctgt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tactgaaccagaggaaaacaccatcactgttggcgaagtttaccaaaatgtggctgctgt 714
Query: 346 ttctgtagcctcttccacgaaacccacccgtgtttctgctactagcgttcaggtgacttc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttctgtagcctcttccacgaaacccacccgtgtttctgctactagcgttcaggtgacttc 774
Query: 406 acttggtacttccaccgtaataattgacctgtcaaaagaggcaactagtgtttacgaagt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 acttggtacttccaccgtaataattgacctgtcaaaagaggcaactagtgtttacgaagt 834
Query: 466 ttccccatcgcaagagtctgctatcgtttcaagcgtcactcagcccgaagagtcaaccat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ttccccatcgcaagagtctgctatcgtttcaagcgtcactcagcccgaagagtcaaccat 894
Query: 526 tgtttctgatgtttctgatgtttctgaagacgcgacatacttttcatctaccagcaacaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 tgtttctgatgtttctgatgtttctgaagacgcgacatacttttcatctaccagcaacaa 954
Query: 586 cgttacttcacaaataccggttactgaaaaatatacggaaacaaaacctacgtccacatc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 cgttacttcacaaataccggttactgaaaaatatacggaaacaaaacctacgtccacatc 1014
Query: 646 tgtgatcttttctacttcaaccacagctgatccttctgtaaccaaaggtacaacacttac 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 tgtgatcttttctacttcaaccacagctgatccttctgtaaccaaaggtacaacacttac 1074
Query: 706 taccattgagtcgaaatctcaacctctagttactcaatctatggtctcatcggagcaaac 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 taccattgagtcgaaatctcaacctctagttactcaatctatggtctcatcggagcaaac 1134
Query: 766 agtaacccttgaaaccagcactctatcatcggaccaaaacttcagttctacgggaatcac 825
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 1135 agtaacccttgaaaccagcactctatcatcggaccaaactttcagtcctacgggaatcac 1194
Query: 826 taccacagaaac-acctttctcttcacctacacatngactggtacttctacttttgtttc 884
|||||||||||| |||| ||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 1195 taccacagaaacaacctctctctccacctacacatcgactgttacttctacttttgtttc 1254
Query: 885 cagctcgnatt 895
||||||| |||
Sbjct: 1255 cagctcgtatt 1265
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5714
Number of Sequences: 1807
Number of extensions: 5714
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)