BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD08FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1467 0.0
>3x_Contig1794
Length = 36744
Score = 1467 bits (740), Expect = 0.0
Identities = 811/828 (97%), Gaps = 5/828 (0%)
Strand = Plus / Plus
Query: 87 cgccatttttgtagctctttcctcttcttcaaagatctccatttcgttagcttccatatc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29680 cgccatttttgtagctctttcctcttcttcaaagatctccatttcgttagcttccatatc 29739
Query: 147 gtcgtcatcatctgaatcaaagtatttccttttactacctttgttgaagatagaccaaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29740 gtcgtcatcatctgaatcaaagtatttccttttactacctttgttgaagatagaccaaat 29799
Query: 207 ttcatctctatcgtacggttgtgatttggagccttgttcacactcgtctaaatcatcatc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29800 ttcatctctatcgtacggttgtgatttggagccttgttcacactcgtctaaatcatcatc 29859
Query: 267 ttcaataaagtctgagagatcttcgtcattctcactgtcataatgttgatctccgtgtct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29860 ttcaataaagtctgagagatcttcgtcattctcactgtcataatgttgatctccgtgtct 29919
Query: 327 tgccataatttgtttcttttctttaagttttaacttcttcgcaagcttttcgtttggttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29920 tgccataatttgtttcttttctttaagttttaacttcttcgcaagcttttcgtttggttg 29979
Query: 387 tgcaaaacggttgaaagactttaccatcactttcgacttcggttcttttacaggtttagc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29980 tgcaaaacggttgaaagactttaccatcactttcgacttcggttcttttacaggtttagc 30039
Query: 447 atctttcgttgccgcctttggtttagcggctttatcaaatccgagtttcttcgggagcgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30040 atctttcgttgccgcctttggtttagcggctttatcaaatccgagtttcttcgggagcgg 30099
Query: 507 cttcttgtcttcctttggtccttccctagacttctgctctgctcgcttcattaattcatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30100 cttcttgtcttcctttggtccttccctagacttctgctctgctcgcttcattaattcatc 30159
Query: 567 aaacgatagtttcttgattggctcccttttcggtaccacgacaggatactttccgcttgt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30160 aaacgatagtttcttgattggctcccttttcggtaccacgacaggatactttccgcttgt 30219
Query: 627 ggtattgacaccaggttttttcttataaattggagcctcatccttcggcgatgacgcttt 686
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 30220 ggtattgacaccaggttttttcttataaattggagcctcat-cttcggcgatgacgcttt 30278
Query: 687 atgcctggccttagcagcaggtttagtcgatgtggatgatataccttgcttcaacctacg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30279 atgcctggccttagcagcaggtttagtcgatgtggatgatataccttgcttcaacctacg 30338
Query: 747 cgccttctttaatcttttgatagcccgggtc-acttcacgaacgtaatccttgggaagta 805
||| | ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 30339 cgcttcctttaatctttgaatag-ccgggtcaacttcacgaacgtaatccttgggaagta 30397
Query: 806 gttttccttcagattgaagagatatagctttatttttggtttgcgggaatgattcggttc 865
||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 30398 gtttttcttcagattgaagagatttagcttta-ttttggtttgc-ggaatgattcggttc 30455
Query: 866 attaatcttaggggcctgcttcaacggctggaacttaaccaaggagct 913
||||||||||| || |||||||||| |||| |||||| ||||| ||||
Sbjct: 30456 attaatcttagtggtctgcttcaactgctgtaacttagccaagaagct 30503
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7150
Number of Sequences: 1807
Number of extensions: 7150
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)