BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD08RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1310 1701 0.0
>3x_Contig1310
Length = 7790
Score = 1701 bits (858), Expect = 0.0
Identities = 866/869 (99%)
Strand = Plus / Plus
Query: 46 attgttttccatcttaaggatcttgatctctttcttcaaagcagttttggaacctggttt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 attgttttccatcttaaggatcttgatctctttcttcaaagcagttttggaacctggttt 327
Query: 106 tttctttggctccacgggttgtgcagattgaatatgatctaaagtaacatccagctgttc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttctttggctccacgggttgtgcagattgaatatgatctaaagtaacatccagctgttc 387
Query: 166 cattttcacctgtggcttaacttttgcgctttccattttagctgatggctttaaggtcgg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cattttcacctgtggcttaacttttgcgctttccattttagctgatggctttaaggtcgg 447
Query: 226 aattggcatgacttgtttcttgcaagcagctggtgcaattttggcacggatgggcttagg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aattggcatgacttgtttcttgcaagcagctggtgcaattttggcacggatgggcttagg 507
Query: 286 ctgggtatgagtgatcgatgttgtctgttcaacttgtattgcttttgacttggcgtttgt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctgggtatgagtgatcgatgttgtctgttcaacttgtattgcttttgacttggcgtttgt 567
Query: 346 agatttacagttagtcaacgggatagttgatgatgatgatgatgatgaggagcttgcggt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agatttacagttagtcaacgggatagttgatgatgatgatgatgatgaggagcttgcggt 627
Query: 406 tggcactcctgtacggactgcagtcgttgtagatgacgctactgtaccttgatcagaaga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tggcactcctgtacggactgcagtcgttgtagatgacgctactgtaccttgatcagaaga 687
Query: 466 agagcaacttttaccagaatcaataacagtggcagccaagtgttttttcgatcccggtct 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agagcaacttttaccagaatcaataacagtggcagccaagtgttttttcgatcccggtct 747
Query: 526 caaattctcaacttctttcactgattccacaggttcttgtttaatcttggcattagtact 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 caaattctcaacttctttcactgattccacaggttcttgtttaatcttggcattagtact 807
Query: 586 tgaagcagaagcaggcgtagtggactctacagccatacccttgacatttgccagttgctg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tgaagcagaagcaggcgtagtggactctacagccatacccttgacatttgccagttgctg 867
Query: 646 ctttatcgataaagaaggactgggttttctacccggtttaggcctcggtggaagaaccca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ctttatcgataaagaaggactgggttttctacccggtttaggcctcggtggaagaaccca 927
Query: 706 gtgcctagacgttcgaatcgtgatcccagtgggtttctcatgtttcttcggctgtaaatt 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gtgcctagacgttcgaatcgtgatcccagtgggtttctcatgtttcttcggctgtaaatt 987
Query: 766 angagcaattgtaatctgctgatgaggcccagtgtgtccgtgaaggggctccaatgaaac 825
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 aggagcaattgtaatctgctgatgaggcccagtgtgtccgtgaaggggctccaatgaaac 1047
Query: 826 tggcctggacattagttaattcttactctgtgtctgaagtgcttttattatagaattctc 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 tggcctggacattagttaattcttactctgtgtctgaagtgcttttattatagaattctc 1107
Query: 886 tccggaccagcgaaaaacatattaactgg 914
|||||||||||||||| |||||||||||
Sbjct: 1108 tccggaccagcgaaaacaatattaactgg 1136
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7038
Number of Sequences: 1807
Number of extensions: 7038
Number of successful extensions: 348
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)