BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD10FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 1407 0.0
>3x_Contig1582
Length = 14087
Score = 1407 bits (710), Expect = 0.0
Identities = 799/817 (97%), Gaps = 9/817 (1%)
Strand = Plus / Minus
Query: 87 accactggtagaagttttcgatgaattaggatccctaactcaaatgtcccttctaatggg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12997 accactggtagaagttttcgatgaattaggatccctaactcaaatgtcccttctaatggg 12938
Query: 147 tgtagtgaaatgccataatgcagtctcaagtgctttcttacagaagatcttggaactttg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12937 tgtagtgaaatgccataatgcagtctcaagtgctttcttacagaagatcttggaactttg 12878
Query: 207 tacgacagacgtccacgatttggacgttagagacatggccatgatgtactggcggtgtct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12877 tacgacagacgtccacgatttggacgttagagacatggccatgatgtactggcggtgtct 12818
Query: 267 atcgatcgacaacggtgatcaaatcatcaaccaattatttgacaagcatgaaattcctaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12817 atcgatcgacaacggtgatcaaatcatcaaccaattatttgacaagcatgaaattcctaa 12758
Query: 327 attgcattctaccttggaccacttctccaaggaaacattacaaagtctacttcaagagct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12757 attgcattctaccttggaccacttctccaaggaaacattacaaagtctacttcaagagct 12698
Query: 387 ctccactctatcctctgtgtatttcaaaccaatctcgcagatgcaacgccgtcccaacga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12697 ctccactctatcctctgtgtatttcaaaccaatctcgcagatgcaacgccgtcccaacga 12638
Query: 447 agttcacatcattaaggataaggatattgatgaattaaagggaatggccacgaacgagat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12637 agttcacatcattaaggataaggatattgatgaattaaagggaatggccacgaacgagat 12578
Query: 507 cctgaaaaacatgaacgatgatgtactacttgacatgggtgatagctctgccacgagaag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12577 cctgaaaaacatgaacgatgatgtactacttgacatgggtgatagctctgccacgagaag 12518
Query: 567 tacaggcgtcctggacgaactaaatgatcttttcgatatcactggtgatatggggaaagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12517 tacaggcgtcctggacgaactaaatgatcttttcgatatcactggtgatatggggaaagt 12458
Query: 627 aaacatttcacagaaaaccaataataaccacaaccacacctcgaattcccatgcaaccga 686
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 12457 aaacatttcacagaaaaccaataataacaacaacaacacctcgaattcccatgcaaccga 12398
Query: 687 tcttctagacttaatgtaaactagtttactctttttgacacctgtacaaactataattat 746
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 12397 tcttctagacttaatgtaaactagtttactcttttgaacacctgtacaaactataattat 12338
Query: 747 aatgggaaaacaatgaagcagattaacttcaatcatgggatgtgcctttctaaaatgtta 806
|||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 12337 aatggg-aaacaatgaagcagataaacttcaatcat-ggatgtgcctttctaaaatgtta 12280
Query: 807 atttatttatggtgcagnnatctactactttattcaagtaacccccaggggcatggtcat 866
||||| ||||||||||| |||||||||| ||| ||||||| |||||| ||||| |||||
Sbjct: 12279 attta-ttatggtgcag-tatctactactatatacaagtaa-ccccagtggcat-gtcat 12224
Query: 867 gttcatgtcataatcatgtcaactcttattccttttg 903
| ||||||||| |||||||||||| ||||||||||||
Sbjct: 12223 g-tcatgtcat-atcatgtcaact-ttattccttttg 12190
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5870
Number of Sequences: 1807
Number of extensions: 5870
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)