BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC50ZD10RM1.SCF screened BAC_end
         (901 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1520                                                        1409   0.0  

>3x_Contig1520 
          Length = 10750

 Score = 1409 bits (711), Expect = 0.0
 Identities = 773/789 (97%), Gaps = 5/789 (0%)
 Strand = Plus / Plus

                                                                        
Query: 45   atatgtgtagttgaacagtatatacgttgctgtttttcatgcttttaggtactggccctt 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985  atatgtgtagttgaacagtatatacgttgctgtttttcatgcttttaggtactggccctt 1044

                                                                        
Query: 105  gttaatcctgggacaatgaatatagtagatgtggcacgtctgtggcacgtctgggtcact 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 gttaatcctgggacaatgaatatagtagatgtggcacgtctgtggcacgtctgggtcact 1104

                                                                        
Query: 165  tagttattcactt--tcccggtgtatttttcaacacccataatacgaattaggttaaaat 222
            ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 tagttattcacatattcccggtgtatttttcaacacccataatacgaattaggttaaaat 1164

                                                                        
Query: 223  aggtgaaaaatgtcaactactgagaatttattcctagtcgttattgcacctagccgttcg 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 aggtgaaaaatgtcaactactgagaatttattcctagtcgttattgcacctagccgttcg 1224

                                                                        
Query: 283  aaaataaggtgtagtcatcaatatagtttgttgttcgttagcatcattgtatgtttttag 342
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 1225 aaaataaggtgtagtcatcaatatagtttgttgttcgttagcatcattgaatgtttttcg 1284

                                                                        
Query: 343  tgttgttgtgtgtttcgcttagagttccgtgtagacgcaggatttttcagttctaaacgt 402
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1285 tgttgttgtgtgtttcgcttagtgttccgtgtagacgcaggatttttcagttctaaacgt 1344

                                                                        
Query: 403  caatcaagtatatgctggacatatataagattgaaactagcttgtgacagttaaaacggt 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 caatcaagtatatgctggacatatataagattgaaactagcttgtgacagttaaaacggt 1404

                                                                        
Query: 463  tcaacctttcaagatgatgttcgaaagtactggtaacgatcgtgtttcctatgcgcactt 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 tcaacctttcaagatgatgttcgaaagtactggtaacgatcgtgtttcctatgcgcactt 1464

                                                                        
Query: 523  gagcagacgtgatattatggcacgttatttcaatctttctgcaccagtcggccatgcagg 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 gagcagacgtgatattatggcacgttatttcaatctttctgcaccagtcggccatgcagg 1524

                                                                        
Query: 583  tgtgccgcttccgaagcatgtgattgcaaaacacgacgacagcaatgttgcagatgataa 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 tgtgccgcttccgaagcatgtgattgcaaaacacgacgacagcaatgttgcagatgataa 1584

                                                                        
Query: 643  ttacacctctgctgttaataataccacanagaatgatgaatttattcttagtgaaaagat 702
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1585 ttacacctctgctgttaataataccacaaagaatgatgaatttattcttagtgaaaagat 1644

                                                                        
Query: 703  attgattttacccattggaatttaggttaaaaataccaataatttgagccaatattgact 762
            ||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 1645 attgaatttacccattgaaattaaggttaaaattaccaataatttgagccaata-tgact 1703

                                                                        
Query: 763  tggtgaaattagcatcggtatcgaaatctttttatgacgccggcgaatgttttcttttta 822
            ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 1704 tggtgaatttagcatcggtatcgaaatctttttatgacg-cggcg-atgttttctttgta 1761

                     
Query: 823  cgaaaatat 831
            |||||||||
Sbjct: 1762 cgaaaatat 1770


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6105
Number of Sequences: 1807
Number of extensions: 6105
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)