BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD11FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1530 0.0
>3x_Contig1686
Length = 15382
Score = 1530 bits (772), Expect = 0.0
Identities = 809/820 (98%), Gaps = 1/820 (0%)
Strand = Plus / Minus
Query: 89 cgaccaaagtaaccttaatttccttggagatttcagggatccatttagacaaatcttggt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13541 cgaccaaagtaaccttaatttccttggagatttcagggatccatttagacaaatcttggt 13482
Query: 149 caacgtaatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaacaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13481 caacgtaatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaacaa 13422
Query: 209 cgaaactcaacaatctcttgcgttcagggtcgttagcagacaaagtagcagccttttcaa 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13421 cgaaactcaacaatctcttgcgttcagggtcgttagcagacaaagtagcagccttttcaa 13362
Query: 269 tgttattcatgattttagttctaatatcttgagcgtccggaatttccttcaagaaggagg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13361 tgttattcatgattttagttctaatatcttgagcgtccggaatttccttcaagaaggagg 13302
Query: 329 cgttttcgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacgacca 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13301 cgttttcgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacgacca 13242
Query: 389 aataatcatagttcaaatcaagttcgtagtcatggtctttagtagcagattttattctaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13241 aataatcatagttcaaatcaagttcgtagtcatggtctttagtagcagattttattctaa 13182
Query: 449 cggtcttggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttcaccag 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13181 cggtcttggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttcaccag 13122
Query: 509 gtgaagatctggtgatggatctgacaggttcgacaatggacttcaactcaacggtgccga 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13121 gtgaagatctggtgatggatctgacaggttcgacaatggacttcaactcaacggtgccga 13062
Query: 569 ctggagtagaaggtagcaatggagtgaacaagaagtagtttcttggagaaacaacaataa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13061 ctggagtagaaggtagcaatggagtgaacaagaagtagtttcttggagaaacaacaataa 13002
Query: 629 cgttatacaaagaagtatccaaatgtttcaataaggacacagaaccccaaccagtaccca 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13001 cgttatacaaagaagtatccaaatgtttcaataaggacacagaaccccaaccagtaccca 12942
Query: 689 aaacgacaagggttttccttggagaaccgttagcgaaagtggcagcttgaggaatttgag 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12941 aaacgacaagggttttccttggagaaccgttagcgaaagtggcagcttgaggaatttgag 12882
Query: 749 gaggtggattagcttccctgtacaattcataggaaacgtaaccagtaccagccaacaaag 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12881 gaggtggattagcttccctgtacaattcataggaaacgtaaccagtaccagccaacaaag 12822
Query: 809 ccgctaggaaaactttcaaagttgtagaaaacactcttcttgcttgcgatggc-ttactg 867
||||||| ||||||||||||| ||||||| ||||||||||||| |||||||| ||||||
Sbjct: 12821 ccgctagagaaactttcaaagtggtagaaaccactcttcttgctagcgatggctttactg 12762
Query: 868 gggacacagctttttgggccatattagaaattgattttgt 907
|| |||||||||||| | ||||||||||||||||||||
Sbjct: 12761 ggacaacagctttttggccaatattagaaattgattttgt 12722
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6562
Number of Sequences: 1807
Number of extensions: 6562
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)