BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD11RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1340 1639 0.0
>3x_Contig1340
Length = 7156
Score = 1639 bits (827), Expect = 0.0
Identities = 866/874 (99%), Gaps = 4/874 (0%)
Strand = Plus / Plus
Query: 47 taaagatcccattgaaaaaaagg-cagaaattaaaatatccgggtaacgaaatatttatt 105
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4718 taaagatcccattgaaaaaaagggcagaaattaaaatatccgggtaacgaaatatttatt 4777
Query: 106 tcattaaaatcgatatactatttacttataatatacgtatagtttagtggtatagatcta 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4778 tcattaaaatcgatatactatttacttataatatacgtatagtttagtggtatagatcta 4837
Query: 166 tggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctctagctcctt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4838 tggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctctagctcctt 4897
Query: 226 tttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagcccaaag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4898 tttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagcccaaag 4957
Query: 286 gtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagctgggaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4958 gtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagctgggaa 5017
Query: 346 atcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgacatctt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5018 atcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgacatctt 5077
Query: 406 ttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatcaggggctgtatatatctt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5078 ttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatcaggggctgtatatatctt 5137
Query: 466 gagtgaatctatatgtagtattacttataaggtttgccactatttcagacctttttgtag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5138 gagtgaatctatatgtagtattacttataaggtttgccactatttcagacctttttgtag 5197
Query: 526 cttttggatgattgtttattggtccgggtaatgaaacggctttgacagcataaaagacag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5198 cttttggatgattgtttattggtccgggtaatgaaacggctttgacagcataaaagacag 5257
Query: 586 gacacattgaggccaaacgcaaagggtggtaaatcgttgtgcagagtgtattaatgcatc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5258 gacacattgaggccaaacgcaaagggtggtaaatcgttgtgcagagtgtattaatgcatc 5317
Query: 646 gcctcagtacaatatatcccaaaaattagggaccgtcaaatcacctagctctctgtaatc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5318 gcctcagtacaatatatcccaaaaattagggaccgtcaaatcacctagctctctgtaatc 5377
Query: 706 catgtgttagccttttctatgatttatagttgtcacccacacaccacacgtttaatattc 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5378 catgtgttagccttttctatgatttatagttgtcacccacacaccacacgtttaatattc 5437
Query: 766 aattgtaaaagaaaaaaagtttgaaaaaattctggatcagaagaaatnggaaagaaatcc 825
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 5438 aattgtaaaagaaaaaaagtttgaaaaaattctggatcagaag-aattggaaagaaatcc 5496
Query: 826 acgatgagcttaaagctggtct-attcaattgattcaatgaggctacatatttgatattc 884
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5497 acgatgagcttaaagct-gtctaattcaattgattcaatgaggctacatatttgatattc 5555
Query: 885 aatccatccggttgattttgttggcattcagtgt 918
|| |||||||||||||||||||||| |||||||
Sbjct: 5556 tattcatccggttgattttgttggcagtcagtgt 5589
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8802
Number of Sequences: 1807
Number of extensions: 8802
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)