BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC50ZD12FM1.SCF screened BAC_end (948 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1174 858 0.0 >3x_Contig1174 Length = 6106 Score = 858 bits (433), Expect = 0.0 Identities = 544/577 (94%), Gaps = 4/577 (0%) Strand = Plus / Minus Query: 351 gctttgtcatcgttcccaaagtctgtttgaattgcgaatccaagaacacatcgttataaa 410 |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| | Sbjct: 6106 gctttgtcatcgttcccanagtctgtntgaattgcgaatccaagaacacatcgttatana 6047 Query: 411 actttaatagacttcttctcaacatagaatcgctgataatgtcctgattcatggctatcc 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6046 actttaatagacttcttctcaacatagaatcgctgataatgtcctgattcatggctatcc 5987 Query: 471 gtgtaagtttttgttctaatgcttgtaaaacctgtttcatagattctttattgtatgagg 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5986 gtgtaagtttttgttctaatgcttgtaaaacctgtttcatagattctttattgtatgagg 5927 Query: 531 agcctccaatgctgcttcggttgttatcgtcttcgtcctcatcatcactgggatcatgag 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5926 agcctccaatgctgcttcggttgttatcgtcttcgtcctcatcatcactgggatcatgag 5867 Query: 591 aaaaccacgttgataatctattactaccattgtcatggctcgcacccttcactcgtagcc 650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5866 aaaaccacgttgataatctattactaccattgtcatggctcgcacccttcactcgtagcc 5807 Query: 651 tttgagaattcacattggaacctaccccgtttcacttccttctgaacctgngctcattta 710 ||||||||||||||||||||||||||| || |||||||||||||||||| ||||||| | Sbjct: 5806 tttgagaattcacattggaacctacccgtttccacttccttctgaacctgggctcattaa 5747 Query: 711 tgtacgcaaattaaactaccttttatacgttggagtataccagatcaaggtcatcgcata 770 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 5746 tgtacgcaaataaaactacctttaatacgttggagtataccagatcaaggtcatcgcata 5687 Query: 771 aagaat-accagtgtccaaggggacaaagtcaaacgtttttccca-tgaaggggttaaaa 828 |||||| ||||||||||||||| |||||||||||||||| ||||| ||||||||| ||| Sbjct: 5686 aagaataaccagtgtccaagggaacaaagtcaaacgtttctcccagtgaaggggtagaaa 5627 Query: 829 accaaaaat-tgtgggatatattctaaactggttcatggatccctttgcctacc-aaact 886 || || ||| ||||| |||| |||||||||||||||||| |||| ||||||| ||||| Sbjct: 5626 acgaagaatctgtggataatatcctaaactggttcatggataccttcgcctaccgaaact 5567 Query: 887 tgccgcttttttgggcggtttgggtttttttaggttc 923 ||||| |||||| ||||||| || |||| |||||| Sbjct: 5566 gtccgctattttggtcggtttgtgtcttttaaggttc 5530 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6307 Number of Sequences: 1807 Number of extensions: 6307 Number of successful extensions: 54 Number of sequences better than 1.0e-20: 1 length of query: 948 length of database: 10,358,551 effective HSP length: 16 effective length of query: 932 effective length of database: 10,329,639 effective search space: 9627223548 effective search space used: 9627223548 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)