BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC50ZD12FM1.SCF screened BAC_end
         (948 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1174                                                         858   0.0  

>3x_Contig1174 
          Length = 6106

 Score =  858 bits (433), Expect = 0.0
 Identities = 544/577 (94%), Gaps = 4/577 (0%)
 Strand = Plus / Minus

                                                                        
Query: 351  gctttgtcatcgttcccaaagtctgtttgaattgcgaatccaagaacacatcgttataaa 410
            |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 6106 gctttgtcatcgttcccanagtctgtntgaattgcgaatccaagaacacatcgttatana 6047

                                                                        
Query: 411  actttaatagacttcttctcaacatagaatcgctgataatgtcctgattcatggctatcc 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6046 actttaatagacttcttctcaacatagaatcgctgataatgtcctgattcatggctatcc 5987

                                                                        
Query: 471  gtgtaagtttttgttctaatgcttgtaaaacctgtttcatagattctttattgtatgagg 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5986 gtgtaagtttttgttctaatgcttgtaaaacctgtttcatagattctttattgtatgagg 5927

                                                                        
Query: 531  agcctccaatgctgcttcggttgttatcgtcttcgtcctcatcatcactgggatcatgag 590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5926 agcctccaatgctgcttcggttgttatcgtcttcgtcctcatcatcactgggatcatgag 5867

                                                                        
Query: 591  aaaaccacgttgataatctattactaccattgtcatggctcgcacccttcactcgtagcc 650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5866 aaaaccacgttgataatctattactaccattgtcatggctcgcacccttcactcgtagcc 5807

                                                                        
Query: 651  tttgagaattcacattggaacctaccccgtttcacttccttctgaacctgngctcattta 710
            |||||||||||||||||||||||||||  || |||||||||||||||||| ||||||| |
Sbjct: 5806 tttgagaattcacattggaacctacccgtttccacttccttctgaacctgggctcattaa 5747

                                                                        
Query: 711  tgtacgcaaattaaactaccttttatacgttggagtataccagatcaaggtcatcgcata 770
            ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5746 tgtacgcaaataaaactacctttaatacgttggagtataccagatcaaggtcatcgcata 5687

                                                                        
Query: 771  aagaat-accagtgtccaaggggacaaagtcaaacgtttttccca-tgaaggggttaaaa 828
            |||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||  |||
Sbjct: 5686 aagaataaccagtgtccaagggaacaaagtcaaacgtttctcccagtgaaggggtagaaa 5627

                                                                        
Query: 829  accaaaaat-tgtgggatatattctaaactggttcatggatccctttgcctacc-aaact 886
            || || ||| |||||   |||| |||||||||||||||||| |||| ||||||| |||||
Sbjct: 5626 acgaagaatctgtggataatatcctaaactggttcatggataccttcgcctaccgaaact 5567

                                                 
Query: 887  tgccgcttttttgggcggtttgggtttttttaggttc 923
              ||||| |||||| ||||||| || |||| ||||||
Sbjct: 5566 gtccgctattttggtcggtttgtgtcttttaaggttc 5530


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6307
Number of Sequences: 1807
Number of extensions: 6307
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)