BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD12RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1472 1509 0.0
>3x_Contig1472
Length = 10822
Score = 1509 bits (761), Expect = 0.0
Identities = 816/829 (98%), Gaps = 4/829 (0%)
Strand = Plus / Plus
Query: 36 gctttaaattt-agttt-aacattttcgccaatcccaaagagtaaatcctgtcacatgtc 93
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gctttaaatttcagtttcaacattttcgccaatcccaaagagtaaatcctgtcacatgtc 328
Query: 94 acgaaagtatgtggtattgaaatctttagttagggtggagtatggttagatctacagaca 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acgaaagtatgtggtattgaaatctttagttagggtggagtatggttagatctacagaca 388
Query: 154 tctctatgtagttatatacatattctatgacaataggaaggctccggaaccttcattcat 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 389 tctctatgtagttatatacatattctatgacaataggaaggctccggaaccttcagtcat 448
Query: 214 tgcttgtgcaatacgatctttgagtaccagtttatcagagtattttggtagtttcaagta 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgcttgtgcaatacgatctttgagtaccagtttatcagagtattttggtagtttcaagta 508
Query: 274 attggcgcatgtcataacgctaggtaggcaatggtctgccgagatgttcccatctgggtg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 attggcgcatgtcataacgctaggtaggcaatggtctgccgagatgttcccatctgggtg 568
Query: 334 cttcaggactactgtgaatttgggttttaagtttttgaaaccgccaagaggtagtttcgg 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cttcaggactactgtgaatttgggttttaagtttttgaaaccgccaagaggtagtttcgg 628
Query: 394 agagccagtgatgaattgtaagaacaaacgtttctgttgtgtcgaaaaattcgacaaaat 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agagccagtgatgaattgtaagaacaaacgtttctgttgtgtcgaaaaattcgacaaaat 688
Query: 454 atctatgaggtctgttatgattggagaatccatcgagtagccatggtctgcatgaatgga 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 atctatgaggtctgttatgattggagaatccatcgagtagccatggtctgcatgaatgga 748
Query: 514 tgagtatagcgtttgcacagaccaatcttcagcaactgcaccaaacaaatcggatagttc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgagtatagcgtttgcacagaccaatcttcagcaactgcaccaaacaaatcggatagttc 808
Query: 574 tgtcggagttaagattagcaatgatgaataagggaatgatttcgaaaatccgttcctgaa 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tgtcggagttaagattagcaatgatgaataagggaatgatttcgaaaatccgttcctgaa 868
Query: 634 ggcagcgagctgcatatctacgcctttgccc-aaaattggtcaaagacacgaatcaagta 692
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 869 ggcagcgagctgcatatctacgcctttgcccaaaaattggtcaaagacacgaatcaagta 928
Query: 693 ctcttccacgttgaaagattcaactaagattttcgaaccacctttcaacaattctatatc 752
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 929 ctcttccacgttgaaagattcaactaagattttcgaaccaccttccaacaattctatatc 988
Query: 753 attaccaggcagcatgaaatataggtcaaagtttnttgatagagtcctcatgacgattat 812
|| |||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||
Sbjct: 989 ataaccaggcagcatgaaatataggtcaaggttt-ttgatagagtcatcatgacgattat 1047
Query: 813 catacaaaaatgcgagggattttcctagttggacataaaactggcctac 861
|||||||||||||||| |||||||||||||| |||| |||||| |||||
Sbjct: 1048 catacaaaaatgcgagtgattttcctagttgaacatcaaactgtcctac 1096
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6246
Number of Sequences: 1807
Number of extensions: 6246
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)