BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE01RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1424 1629 0.0
>3x_Contig1424
Length = 9842
Score = 1629 bits (822), Expect = 0.0
Identities = 846/852 (99%), Gaps = 2/852 (0%)
Strand = Plus / Minus
Query: 54 tttcatttctttgcaccatacttgttgacggatttaccatcaggaatggtaaagaaaaca 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5790 tttcatttctttgcaccatacttgttgacggatttaccatcaggaatggtaaagaaaaca 5731
Query: 114 tatggctttccatcctttggtagagagtccaatctgaagtaaccctttctctcgaactga 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 tatggctttccatcctttggtagagagtccaatctgaagtaaccctttctctcgaactga 5671
Query: 174 atgatgtcaccaaccttcatgtctttaacatttaaatcagcgtaagctgtagtgtggaat 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5670 atgatgtcaccaaccttcatgtctttaacatttaaatcagcgtaagctgtagtgtggaat 5611
Query: 234 tcagttttaggagttaggaagtcttcgaagttttcgccttcttccaacttatctttagag 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5610 tcagttttaggagttaggaagtcttcgaagttttcgccttcttccaacttatctttagag 5551
Query: 294 attaagtggtcaaagtcaaccaaatcagcttcgaccttgtcgtcggtatcagccaaccag 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5550 attaagtggtcaaagtcaaccaaatcagcttcgaccttgtcgtcggtatcagccaaccag 5491
Query: 354 gttaacttgaatttagtggtcttgaagtcaccttccaaatgaagtttagcgttgaaggaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5490 gttaacttgaatttagtggtcttgaagtcaccttccaaatgaagtttagcgttgaaggaa 5431
Query: 414 ccatcatcgtttttcttggtgatgatagcattaccccagtccattagagtaacctcttca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5430 ccatcatcgtttttcttggtgatgatagcattaccccagtccattagagtaacctcttca 5371
Query: 474 ccttcagataacaatttagcatcttcttcgtcaataactatatccttgtagtagatgacc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5370 ccttcagataacaatttagcatcttcttcgtcaataactatatccttgtagtagatgacc 5311
Query: 534 ttcttttcaccgatagcagggtttttcttgtgttttaacttcatttcaacgtttggtgtt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5310 ttcttttcaccgatagcagggtttttcttgtgttttaacttcatttcaacgtttggtgtt 5251
Query: 594 tgaggcacgtcatcaccttccaagtgtactttaactggggaaacaatagcagtgtgcctt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5250 tgaggcacgtcatcaccttccaagtgtactttaactggggaaacaatagcagtgtgcctt 5191
Query: 654 ggggcaactggatcaataacctttttgttaaatgaccaaatcaagttccattccaagtta 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5190 ggggcaactggatcaataacctttttgttaaatgaccaaatcaagttccattccaagtta 5131
Query: 714 ataacatttctggatggaccttgagacaaaacanagtttctcaaaccttcaatggtcata 773
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5130 ataacatttctggatggaccttgagacaaaacaaagtttctcaaaccttcaatggtcata 5071
Query: 774 cctcttcttctaacacctctgacggttgggaatctgggatcattccagttagatacaatg 833
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 5070 cctcttcttctaacacctctgacggttgggaatcttggatcatcccagttagatacaatg 5011
Query: 834 ttccttgtcgaccaaccattgcaactttcttcttggacaacagtgttctaacanaattga 893
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 5010 -tccttgtcgaccaaccattgcaactttc-tcttggacaacagtgttctaacaaaattga 4953
Query: 894 cacgagcgaaat 905
||||||||||||
Sbjct: 4952 cacgagcgaaat 4941
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6717
Number of Sequences: 1807
Number of extensions: 6717
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)