BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE02RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1144 1719 0.0
>3x_Contig1144
Length = 4618
Score = 1719 bits (867), Expect = 0.0
Identities = 869/870 (99%)
Strand = Plus / Minus
Query: 47 attcaatattatgtgaaggttggagaatttgataagttcctattgtgttatgtgattttc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 attcaatattatgtgaaggttggagaatttgataagttcctattgtgttatgtgattttc 1213
Query: 107 aaactgggactaattaagggtaagacattaatcttcgttaacaatatcgatagaggatac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 aaactgggactaattaagggtaagacattaatcttcgttaacaatatcgatagaggatac 1153
Query: 167 agactaaagctagttttagaacagtttggtattaaatcttgcattttgaacagtgaactg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 agactaaagctagttttagaacagtttggtattaaatcttgcattttgaacagtgaactg 1093
Query: 227 ccagcaaattcaagacagcatatcgtagaagaattcaacaagaacgtttatcaactgtta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 ccagcaaattcaagacagcatatcgtagaagaattcaacaagaacgtttatcaactgtta 1033
Query: 287 atagctacagacgatactgaatatatcaaagaagaagacgaagacttagaatcagaaaaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 atagctacagacgatactgaatatatcaaagaagaagacgaagacttagaatcagaaaaa 973
Query: 347 actgaggatggtttagttgaggttgtcgatgattccactgttactacgaaagacaatgca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 actgaggatggtttagttgaggttgtcgatgattccactgttactacgaaagacaatgca 913
Query: 407 aagaaacaaaagaagccaaagctaaacgtggagaaagacaaagaatatggtgtatctcgc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 aagaaacaaaagaagccaaagctaaacgtggagaaagacaaagaatatggtgtatctcgc 853
Query: 467 ggtgtggacttcaaaaatgttgcctgtgtattaaactttgatctaccaaccactgcaaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ggtgtggacttcaaaaatgttgcctgtgtattaaactttgatctaccaaccactgcaaaa 793
Query: 527 tcgtatgtacatagaattggtagaacagctcgtgcagggaagtcaggaatttctatttct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tcgtatgtacatagaattggtagaacagctcgtgcagggaagtcaggaatttctatttct 733
Query: 587 tttgttgttcctttgaaggaattcgggaagcataaaccatctatgatcaagagtgctaag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tttgttgttcctttgaaggaattcgggaagcataaaccatctatgatcaagagtgctaag 673
Query: 647 aaggatgaaaagatactaggcagaattataaaacaacaggctaaattaggctttgaacta 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaggatgaaaagatactaggcagaattataaaacaacaggctaaattaggctttgaacta 613
Query: 707 cagccttacaactttgatatcaaacaggtcgaaggtttccgttatagaatggaagacggt 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cagccttacaactttgatatcaaacaggtcgaaggtttccgttatagaatggaagacggt 553
Query: 767 ttccgtgcagtaactcaggttgctattagagaggcaaggataaaggagttaaaacaggaa 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttccgtgcagtaactcaggttgctattagagaggcaaggataaaggagttaaaacaggaa 493
Query: 827 cttttggcaagtgagaaactaaagagacattttgaagagaatcctcatgacttagagagt 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cttttggcaagtgagaaactaaagagacattttgaagagaatcctcatgacttagagagt 433
Query: 887 ttgagacatgacnaggagttacatcctgct 916
|||||||||||| |||||||||||||||||
Sbjct: 432 ttgagacatgacaaggagttacatcctgct 403
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7690
Number of Sequences: 1807
Number of extensions: 7690
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)