BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE03FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1556 0.0
>3x_Contig1738
Length = 21411
Score = 1556 bits (785), Expect = 0.0
Identities = 849/864 (98%), Gaps = 5/864 (0%)
Strand = Plus / Minus
Query: 86 tgccgctctattgaacaaaaggtgtgagttaattggcatcaaaccggggaacataggaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15880 tgccgctctattgaacaaaaggtgtgagttaattggcatcaaaccggggaacataggaat 15821
Query: 146 atcagaactgaccttttcacgaactaatttctcaaacgataggaacttgtctacatcgta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15820 atcagaactgaccttttcacgaactaatttctcaaacgataggaacttgtctacatcgta 15761
Query: 206 aaacaactgtgtgatgataaaatcagcaccggcatccactttctccttcaaatacggtaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15760 aaacaactgtgtgatgataaaatcagcaccggcatccactttctccttcaaatacggtaa 15701
Query: 266 atctctcatcggatcttgcaaactttcatcggcttcaccctcacaatggccctcgggata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15700 atctctcatcggatcttgcaaactttcatcggcttcaccctcacaatggccctcgggata 15641
Query: 326 tgctgccacgcctacacagaaatcatcgccataatttttcttgatataacgaaccaaatc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15640 tgctgccacgcctacacagaaatcatcgccataatttttcttgatataacgaaccaaatc 15581
Query: 386 caccgcatatttgaactcagtatctgcatcaggagaccattcttcgccaatagctggatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15580 caccgcatatttgaactcagtatctgcatcaggagaccattcttcgccaatagctggatc 15521
Query: 446 acctctcaaggcaagaatgtttctaatatccgcatctctagcagccttcaatgcctcatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15520 acctctcaaggcaagaatgtttctaatatccgcatctctagcagccttcaatgcctcatc 15461
Query: 506 aataatatccttgttcatgttggtacaagttagatgcatgcaaacaggaacatttaactc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15460 aataatatccttgttcatgttggtacaagttagatgcatgcaaacaggaacatttaactc 15401
Query: 566 acgttgcgcaatagttgcaagttccaaagtcttccccgcagtagtcccaccagcagccca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15400 acgttgcgcaatagttgcaagttccaaagtcttccccgcagtagtcccaccagcagccca 15341
Query: 626 tgttacagtaataaataacggattcagcgcacacatacgctccatacgagcntagc-agt 684
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 15340 tgttacagtaataaataacggattcagcgcacacatacgctccatacgagc-tagcaagt 15282
Query: 685 tcctcttaccaggttcagtctttggagggaagaactccaacgaaacacagggtcccttta 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15281 tcctcttaccaggttcagtctttggagggaagaactccaacgaaacacagggtcccttta 15222
Query: 745 actcatcgaaccgttgcttcaccgttaccatgtcgaattttncctttgtgttcgacctca 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 15221 actcatcgaaccgttgcttcaccgttaccatgtcgaattttccctttgtgttcgacctca 15162
Query: 805 ttgacaaaaccaataagctgtattaatagatctttgaaatcacaactgatacagcccact 864
| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 15161 tagacaaaacaataaagctgtattaatagatctttgaaatcacaactgatacagccaact 15102
Query: 865 tatcacactagaaatgggcactttcagcttggacttagtctctttgacacaagtc-acaa 923
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||
Sbjct: 15101 aatcacactagaaat-ggcac-ttcaggctggacttagtctctttgacacaagtcaacag 15044
Query: 924 gttgatccctctcattcttgtcaa 947
||||||||||||||||||||||||
Sbjct: 15043 gttgatccctctcattcttgtcaa 15020
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5408
Number of Sequences: 1807
Number of extensions: 5408
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)