BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE03RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig257 1657 0.0
>3x_Contig257
Length = 1630
Score = 1657 bits (836), Expect = 0.0
Identities = 874/883 (98%), Gaps = 3/883 (0%)
Strand = Plus / Minus
Query: 63 gagtttatgagttccgcagttcttgaggaagaaatatgggaacactattcgcaacaatag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 gagtttatgagttccgcagttcttgaggaagaaatatgggaacactattcgcaacaatag 1571
Query: 123 aggtattgtaccattagctttaaaagtgaaaaggtatagagggaatccgataatttgaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 aggtattgtaccattagctttaaaagtgaaaaggtatagagggaatccgataatttgaag 1511
Query: 183 ctgtttttcggtcgagattgaaagcatgccctttaaagtttctgcatacacatctaacgc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 ctgtttttcggtcgagattgaaagcatgccctttaaagtttctgcatacacatctaacgc 1451
Query: 243 tttagtattggatatatttagaatctttcttagcagttcttctgaaaacagagtgcgtag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 tttagtattggatatatttagaatctttcttagcagttcttctgaaaacagagtgcgtag 1391
Query: 303 ttgccaaagcccaactttgaatagacacttcaccggattgaagacataactgtgtaaagt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 ttgccaaagcccaactttgaatagacacttcaccggattgaagacataactgtgtaaagt 1331
Query: 363 aagtacagtagcagaatatcttgttacttttcgacaaaaggaaaacaatctcaagggcca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1330 aagtacagtagcagaatatcttgttacttttcgacaaaaggaaaacaatctcaagggcca 1271
Query: 423 agccggtgatctgtactgtaacgctgatgtattttttaacatcttttgtttacattgtgg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1270 agccggtgatctgtactgtaacgctgatgtattttttaacatcttttgtttacattgtgg 1211
Query: 483 gcatggtggtatgtcttctggaagtcctctccatagttcgtcatacgagaaagaagtatc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1210 gcatggtggtatgtcttctggaagtcctctccatagttcgtcatacgagaaagaagtatc 1151
Query: 543 tggagcatttagatgggctagggccctgatcaaaagatcaccaacacaaataaaactggc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1150 tggagcatttagatgggctagggccctgatcaaaagatcaccaacacaaataaaactggc 1091
Query: 603 ccatgtttgacccactaacggtatctcctgcacagtttcagcaaacccaattactctccc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 ccatgtttgacccactaacggtatctcctgcacagtttcagcaaacccaattactctccc 1031
Query: 663 catgtccctatggctatcaatgaggtagcatagtcttcgagatatttcctgtgatgaatt 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 catgtccctatggctatcaatgaggtagcatagtcttcgagatatttcctgtgatgaatt 971
Query: 723 aatcttgtatgtatcataagtatagtaactccctagcttcgacttatttagatcgaatat 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 aatcttgtatgtatcataagtatagtaactccctagcttcgacttatttagatcgaatat 911
Query: 783 ccatcctattagacattttctgtgtacctgtnagttac-accgcattggtgtacgatcca 841
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 910 ccatcctattagacattttctgtgtacctgtaagttacaaccgcattggtgtacgatcca 851
Query: 842 gtcgtcgttcttacactccgtatctaaacacacccaac-aacgtactgcttgtgaaaaag 900
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 850 gtcgtcgttctcacactccgtatctaaacacacccaacaaacgtactgcttgtgaaatag 791
Query: 901 a-aattcatacaacttcggagtgtcatcctaaaactgcctagg 942
| || ||||||||||||||||||||||||||||||||||||
Sbjct: 790 atcatcaatacaacttcggagtgtcatcctaaaactgcctagg 748
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5852
Number of Sequences: 1807
Number of extensions: 5852
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)