BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE04FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 1530 0.0
>3x_Contig1758
Length = 25930
Score = 1530 bits (772), Expect = 0.0
Identities = 825/840 (98%), Gaps = 2/840 (0%)
Strand = Plus / Minus
Query: 85 ctcgataagattttctctggtatgagtcgtaagtacgaattggtcttgtgaatattccgg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11965 ctcgataagattttctctggtatgagtcgtaagtacgaattggtcttgtgaatattccgg 11906
Query: 145 ccagtgagatttgataacctcatatatcgttctgacagtatcatgcattgcatcgaacct 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11905 ccagtgagatttgataacctcatatatcgttctgacagtatcatgcattgcatcgaacct 11846
Query: 205 tctcactagtcttttaccatcaccggatcgtacttgtattctggttgtgattccaggttt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11845 tctcactagtcttttaccatcaccggatcgtacttgtattctggttgtgattccaggttt 11786
Query: 265 gttatcaggttctgcatgttctattggtttgattgagtcgaagagtttccattgcgctcc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11785 gttatcaggttctgcatgttctattggtttgattgagtcgaagagtttccattgcgctcc 11726
Query: 325 gtcgggctcttcagtttcttcggtttcttccacttgatcagatttctcatttgtttcgtc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11725 gtcgggctcttcagtttcttcggtttcttccacttgatcagatttctcatttgtttcgtc 11666
Query: 385 cgaggtagtaggagtctggttgcctagcgattctcgtatggccaattcaagctgtttttc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11665 cgaggtagtaggagtctggttgcctagcgattctcgtatggccaattcaagctgtttttc 11606
Query: 445 ctcacttaaagtgctgggatcaatctttggagtgggttccttaacaggtggattagtagt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11605 ctcacttaaagtgctgggatcaatctttggagtgggttccttaacaggtggattagtagt 11546
Query: 505 agtgggatctaatgagaattcctctagaaatatctctagctcttgtctgaaattttccac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11545 agtgggatctaatgagaattcctctagaaatatctctagctcttgtctgaaattttccac 11486
Query: 565 agttggcacttcacggctccaaaatttcaacctctccccggttattggatccaagatggc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11485 agttggcacttcacggctccaaaatttcaacctctccccggttattggatccaagatggc 11426
Query: 625 gatatgaggacaatcttccttatcgttgaacccataacgttgtacataggcagatgctag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11425 gatatgaggacaatcttccttatcgttgaacccataacgttgtacataggcagatgctag 11366
Query: 685 tcttgattcatattgatattgcagaaatatgaaattttgttttatgaaggattttatacc 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11365 tcttgattcatattgatattgcagaaatatgaaattttgttttatgaaggattttatacc 11306
Query: 745 tgcattggaccaaagatctctgttaagcatcttgcacttggaaatatctgcacattggat 804
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct: 11305 tgcattggaccaaagatctctgttaagcatctggcactggaaaatatctgcacattggat 11246
Query: 805 gttaatcattacccatttattcctttttcttggctttttgccttgcagaggcaaatatcg 864
||||||||||||||||||||||| |||||||||||||||||||||||| | | || ||||
Sbjct: 11245 gttaatcattacccatttattcc-ttttcttggctttttgccttgcagtgtc-aagatcg 11188
Query: 865 tattttgccattaaatcaaatgggagtttaaacaataatgcttgcctcggttcctttgac 924
||||||||||||||||| ||||| || |||||||||||||| |||| | ||||||||||
Sbjct: 11187 tattttgccattaaatcgaatggaggtctaaacaataatgctagcctggtttcctttgac 11128
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6107
Number of Sequences: 1807
Number of extensions: 6107
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)