BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE04RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1567 930 0.0
3x_Contig787 204 2e-52
>3x_Contig1567
Length = 11673
Score = 930 bits (469), Expect = 0.0
Identities = 496/501 (99%), Gaps = 3/501 (0%)
Strand = Plus / Minus
Query: 47 ttagcctgaaatcttgacaaaaaatcagttttcactgtaaaagaagagatgagataggat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttagcctgaaatcttgacaaaaaatcagttttcactgtaaaagaagagatgagataggat 439
Query: 107 ttaaggaacgtttcgttccgttgtatggtggaagaaggtactggatggtgctagccttcg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttaaggaacgtttcgttccgttgtatggtggaagaaggtactggatggtgctagccttcg 379
Query: 167 tgcggtttgggtctgagttgaaaccggaaagatatttgccttttgtcccgttgaattttg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgcggtttgggtctgagttgaaaccggaaagatatttgccttttgtcccgttgaattttg 319
Query: 227 attcgtggaacggtttttcactggttaattcgagattgcactggaacattgaggaaggaa 286
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 attcgtgga-cggtttttcactggttaattcgagattgcactggaacattgaggaaggaa 260
Query: 287 cctaaaactgaactgatacaatatgcctcgtgatccgttgatcggtattgttggaaagcc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cctaaaactgaactgatacaatatgcctcgtgatccgttgatcggtattgttggaaagcc 200
Query: 347 atctagtggtaaatctaccactctcaattctttgactgatgcttctgcgcaagtcggagc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atctagtggtaaatctaccactctcaattctttgactgatgcttctgcgcaagtcggagc 140
Query: 407 attcccctttactacaattgaaccgaatagagctactggatacttgcaagtgaactgtgc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 attcccctttactacaattgaaccgaatagagctactggatacttgcaagtgaactgtgc 80
Query: 467 ctgcagtagggtagggttgcaaaagttgtgtaaaccgaattatggatggtgtgagaacgg 526
||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct: 79 ctgcagtagggtagggttgcaaagtttgtgt-aaccgaattatggatggtgtgag-acgg 22
Query: 527 tcttagacacattcctatcat 547
|||||||||||||||||||||
Sbjct: 21 tcttagacacattcctatcat 1
>3x_Contig787
Length = 1880
Score = 204 bits (103), Expect = 2e-52
Identities = 132/138 (95%), Gaps = 3/138 (2%)
Strand = Plus / Minus
Query: 770 gagatgggggttcatcgtccgaaaac-tactgcgaccaagtccagtgctgtagatacgtt 828
||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 1880 gagatgggggtccatcgtccganaacatactgcgaccaagtccagtgctgtagatacgtt 1821
Query: 829 gcagcagcagttcggtgggtacggttcacattgcgcc-atgattcaaaaagctttaggta 887
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct: 1820 gcagcagcagttcggtgggtacggttcaca-tgcgccaatgattcaaagagctttaggta 1762
Query: 888 gaattcctggcttaccac 905
||||||||||||||||||
Sbjct: 1761 gaattcctggcttaccac 1744
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4842
Number of Sequences: 1807
Number of extensions: 4842
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)