BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE05FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1511 0.0
>3x_Contig1775
Length = 26320
Score = 1511 bits (762), Expect = 0.0
Identities = 820/838 (97%), Gaps = 1/838 (0%)
Strand = Plus / Minus
Query: 86 catacattatatatcaggtttaagatgttgatttcaaagtagtgattttagaacgtagag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25453 catacattatatatcaggtttaagatgttgatttcaaagtagtgattttagaacgtagag 25394
Query: 146 aatttatattgagtttaagtttaatctttatatcctcgtacaagtggaaaagggagtagt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25393 aatttatattgagtttaagtttaatctttatatcctcgtacaagtggaaaagggagtagt 25334
Query: 206 ctggagtgttctaattgaggaattggaattgcaggtgaaagtcgtgtatcgaaaccaaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25333 ctggagtgttctaattgaggaattggaattgcaggtgaaagtcgtgtatcgaaaccaaaa 25274
Query: 266 actgtgagaatagggaaacaatacgattcaatacgatacgacacgatctataaatcaact 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25273 actgtgagaatagggaaacaatacgattcaatacgatacgacacgatctataaatcaact 25214
Query: 326 gcagaaagggaattcaaaagaaaaaatatatagtgtctagtatgaagagaagtagtagac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25213 gcagaaagggaattcaaaagaaaaaatatatagtgtctagtatgaagagaagtagtagac 25154
Query: 386 ttagacgcagggcagagccagagccagagcaagaggcaaagcaagagcaggagatcagta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25153 ttagacgcagggcagagccagagccagagcaagaggcaaagcaagagcaggagatcagta 25094
Query: 446 cgaaagtcgagacgaaagctgaagagacggcccttcccaatggtgacgtagaatcagatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25093 cgaaagtcgagacgaaagctgaagagacggcccttcccaatggtgacgtagaatcagatt 25034
Query: 506 acgaaacaacggctgtgaaatgggatgactatatcgaccgaacaatcttgaaccagttaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25033 acgaaacaacggctgtgaaatgggatgactatatcgaccgaacaatcttgaaccagttaa 24974
Query: 566 ataagttgcccccaatcgcgttggattttgtaccgttgcaggaattgatccagtcctggt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24973 ataagttgcccccaatcgcgttggattttgtaccgttgcaggaattgatccagtcctggt 24914
Query: 626 attatcagtacagtgtgatgtggttccataacgtttgtactggttactggacgctaggtt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24913 attatcagtacagtgtgatgtggttccataacgtttgtactggttactggacgctaggtt 24854
Query: 686 tcactacggagaaaccttggtggactgaaatcacgtttgatgaaagaataatgctcttag 745
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24853 tcactacggggaaaccttggtggactgaaatcacgtttgatgaaagaataatgctcttag 24794
Query: 746 attat-atgcgggatggagtctcgaaaatgattcgctggatttggttcaatcggaggatt 804
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 24793 attataatgcgggatggagtctcgaaaatgattcgttggatttggttcaatcggaggatc 24734
Query: 805 caaatgggggccgcacggatcaggaccaagagggtcatatactgaatttattcaagagtt 864
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 24733 caaatgggggcagcacggatcaggacgaagagggtcatatactgaatttattcaagagta 24674
Query: 865 tctggttggaggtgatcacgccttttaaaccggataagacggtttcctttaaacattg 922
||| |||| | |||||| | |||| ||| |||||||||||| ||||| ||||||||
Sbjct: 24673 tcttgttgaggttgatcaggtctttagaacaggataagacggtatccttgaaacattg 24616
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5994
Number of Sequences: 1807
Number of extensions: 5994
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)