BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE05RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1438 1554 0.0
>3x_Contig1438
Length = 9247
Score = 1554 bits (784), Expect = 0.0
Identities = 818/828 (98%), Gaps = 1/828 (0%)
Strand = Plus / Minus
Query: 63 taaaaatgtcttttaact-accatttttggaattcttcgacgctatcaaccaagaggttg 121
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9217 taaaaatgtcttttaactcaccatttttggaattcttcgacgctatcaaccaagaggttg 9158
Query: 122 accaatttaacagattgttgaattcgagtggagttgttgctccaaagaaaattgaaggta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9157 accaatttaacagattgttgaattcgagtggagttgttgctccaaagaaaattgaaggta 9098
Query: 182 attatcctgctgattcgagacaggtcgcaaaacagtccaagaacaatagtaactcattat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9097 attatcctgctgattcgagacaggtcgcaaaacagtccaagaacaatagtaactcattat 9038
Query: 242 caaactggttcaaagacccatggtttgctgacctaggtcaaaatttgattcctcctttgg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9037 caaactggttcaaagacccatggtttgctgacctaggtcaaaatttgattcctcctttgg 8978
Query: 302 acatcttggatcatgaaaaggaatacgaagttcatgttagcgtcccaggcatcaaggaaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8977 acatcttggatcatgaaaaggaatacgaagttcatgttagcgtcccaggcatcaaggaaa 8918
Query: 362 agaaagatattaacttagagtaccacaaggatgccaatgaaatcgtcatatcaggtgaga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8917 agaaagatattaacttagagtaccacaaggatgccaatgaaatcgtcatatcaggtgaga 8858
Query: 422 tcccagacgtgacaactgaggagaccaaagattctgcaaagataagagaaagaagatatg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8857 tcccagacgtgacaactgaggagaccaaagattctgcaaagataagagaaagaagatatg 8798
Query: 482 gtaaatttagcagagttgtcagattaccagattccccaggtatcgacgttgaaaacatca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8797 gtaaatttagcagagttgtcagattaccagattccccaggtatcgacgttgaaaacatca 8738
Query: 542 aggcaaactacactaacggtgtcttagtcttgaatgttccaaaattgaaacctactgaag 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8737 aggcaaactacactaacggtgtcttagtcttgaatgttccaaaattgaaacctactgaag 8678
Query: 602 aggataaggctaaggtctataagattgaagttggcgatgaagctgctaaattgtgagttc 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8677 aggataaggctaaggtctataagattgaagttggcgatgaagctgctaaattgtaagttc 8618
Query: 662 gttccgatgagatttttgacttatgatgaatgataacaaatattatgataacagctttac 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8617 gttccgatgagatttttgacttatgatgaatgataacaaatattatgataacagctttac 8558
Query: 722 tgaaataaatacatctaatgattcaagaaatgcgaatatgttgaacgtatttcattttac 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8557 tgaaataaatacatctaatgattcaagaaatgcgaatatgttgaacgtatttcattttac 8498
Query: 782 ttaatctatgtggtattccactgattaattcacatttataagtgattgttgtgttcttag 841
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 8497 ttaatctatgtgttattccactgattaattcacatttataagttattgttgtgttctaag 8438
Query: 842 cagtggtgggagttatcctatcggctttctttggttttttttggtttt 889
||||||||| ||||||| ||||||||||||| | |||| |||||||||
Sbjct: 8437 cagtggtggaagttatcgtatcggctttcttggtttttctttggtttt 8390
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8301
Number of Sequences: 1807
Number of extensions: 8301
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)