BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE06FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1250 1602 0.0
>3x_Contig1250
Length = 5563
Score = 1602 bits (808), Expect = 0.0
Identities = 842/851 (98%), Gaps = 2/851 (0%)
Strand = Plus / Plus
Query: 93 aatctcgatattttcgccattcgaaagcgagtcgatgaaaaggttgatgcaagagttaag 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4033 aatctcgatattttcgccattcgaaagcgagtcgatgaaaaggttgatgcaagagttaag 4092
Query: 153 agtttccttttctatcttagtgaatgaccagatcttgatcaaaaccaacgcagtcagtac 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4093 agtttccttttctatcttagtgaatgaccagatcttgatcaaaaccaacgcagtcagtac 4152
Query: 213 tttatacttctcgaccttaaatgattgttgtaacgtcttaaggtaatgctctgcaatgaa 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4153 tttatacttctcgaccttaaatgattgttgtaacgtcttaaggtaatgctctgcaatgaa 4212
Query: 273 tcttctgactgcttcgtcaatacaggaaacagccaagagacgaagagccccgtttacaag 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4213 tcttctgactgcttcgtcaatacaggaaacagccaagagacgaagagccccgtttacaag 4272
Query: 333 atgttcatcatccgctgaagaattcaaattcctagtcaatatgtcctggaaatctgtcga 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4273 atgttcatcatccgctgaagaattcaaattcctagtcaatatgtcctggaaatctgtcga 4332
Query: 393 aagaaacatgtctctacaaacgccaaggcagatagggaacaccaaagacatagcatctac 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4333 aagaaacatgtctctacaaacgccaaggcagatagggaacaccaaagacatagcatctac 4392
Query: 453 aagcaaacgtaaagaaacattgccagaatcttcctcggcttcaattaacaattgttgtag 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4393 aagcaaacgtaaagaaacattgccagaatcttcctcggcttcaattaacaattgttgtag 4452
Query: 513 tatattcccacacttctgctccgtattatctgaatggttggacatcaacgatttcatcgt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4453 tatattcccacacttctgctccgtattatctgaatggttggacatcaacgatttcatcgt 4512
Query: 573 tacaagaagtaatggccgtatctcttgtatgctacttcttaaaagtattcttctgcaaag 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4513 tacaagaagtaatggccgtatctcttgtatgctacttcttaaaagtattcttctgcaaag 4572
Query: 633 aaactccaattgaccccaatccttcacataaccggcaagcatcggcacacacttccagca 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4573 aaactccaattgaccccaatccttcacataaccggcaagcatcggcacacacttccagca 4632
Query: 693 tcgtgtttcctcgccattgttatgtatctctgaggtccagntttgaataacgtgcaacaa 752
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4633 tcgtgtttcctcgccattgttatgtatctctgaggtccagttttgaataacgtgcaacaa 4692
Query: 753 atccgtcacgtccttcggagatgaacatctttctttcaatacactttgagcatcggcact 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4693 atccgtcacgtccttcggagatgaacatctttctttcaatacactttgagcatcggcact 4752
Query: 813 atcactgccaacaattctatcccaaactttattcatagcgttgatatctttattggttta 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4753 atcactgccaacaattctatcccaaactttattcatagcgttgatatctttattgaatta 4812
Query: 873 caaaaagaattaatt-acagaattgaactttcggta-cagcccaaacaactgtatggtag 930
|||||||||| |||| ||||||||||||| |||||| ||||||||||||||||||| |||
Sbjct: 4813 caaaaagaataaattcacagaattgaactatcggtaccagcccaaacaactgtatgttag 4872
Query: 931 atccggtttag 941
||| |||||||
Sbjct: 4873 atcgggtttag 4883
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6345
Number of Sequences: 1807
Number of extensions: 6345
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)