BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE06RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1411 1689 0.0
>3x_Contig1411
Length = 7271
Score = 1689 bits (852), Expect = 0.0
Identities = 893/902 (99%), Gaps = 4/902 (0%)
Strand = Plus / Plus
Query: 46 taatcctttaaactcgatgattttaaagataagtagcgacagaataatgatgaaagcaga 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4392 taatcctttaaactcgatgattttaaagataagtagcgacagaataatgatgaaagcaga 4451
Query: 106 aatgttatagatagcaatagcgattttatgaaacggatggtcgtaccacggtacgttcaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4452 aatgttatagatagcaatagcgattttatgaaacggatggtcgtaccacggtacgttcaa 4511
Query: 166 atagctcgaaagagaccgtgatagtgtaagccagtagaggatctgaacagatccggtgtc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4512 atagctcgaaagagaccgtgatagtgtaagccagtagaggatctgaacagatccggtgtc 4571
Query: 226 tttagctgggacaatcaaaagaatgtgtcaaaaaactcattacatagatttgcatatgta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4572 tttagctgggacaatcaaaagaatgtgtcaaaaaactcattacatagatttgcatatgta 4631
Query: 286 gtctatgacagcgcactgtgtcacaaggtttatatacttgtgacatctttcggatgagat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4632 gtctatgacagcgcactgtgtcacaaggtttatatacttgtgacatctttcggatgagat 4691
Query: 346 gcgtacaaaagtcttgccttggcattgtgtacagagaagtattgcgaagacggttcggta 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4692 gcgtacaaaagtcttgccttggcattgtgtacagagaagtattgcgaagacggttcggta 4751
Query: 406 gcgaagagtaatgttttgtgggtatttatgtcaggatgacgcagttcatgtagatgaagt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4752 gcgaagagtaatgttttgtgggtatttatgtcaggatgacgcagttcatgtagatgaagt 4811
Query: 466 acattcatgcatctgtttctgtactgaagcaagtgggttggagtgcagctagtattaggt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4812 acattcatgcatctgtttctgtactgaagcaagtgggttggagtgcagctagtattaggt 4871
Query: 526 tcggagaagtaaaggaatttagtgtcctcttttatggatttaattggcttgtggtataaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4872 tcggagaagtaaaggaatttagtgtcctcttttatggatttaattggcttgtggtataaa 4931
Query: 586 ctttaaccttaaatacctttaatcgagaaataaagatcaattttgaacaaaaccaatgtg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4932 ctttaaccttaaatacctttaatcgagaaataaagatcaattttgaacaaaaccaatgtg 4991
Query: 646 atatggcagtatatattatttgactgtcagttgtggtccatgccatgatttgcgccatat 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4992 atatggcagtatatattatttgactgtcagttgtggtccatgccatgatttgcgccatat 5051
Query: 706 aggctgatatatatttgaataaaggggctatatccttctgggaattatctcctgtttcgt 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5052 aggctgatatatatttgaataaaggggctatatccttctgggaattatctcctgtttcgt 5111
Query: 766 cctttc-acagtttttgtttatatatttgatctcatctcgatttccctttanaataaacc 824
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5112 cctttcaacagtttttgtttatatatttgatctcatctcgatttccctttaaaataaacc 5171
Query: 825 accagaacagttaattcaaactaaaacaatacaaaggacagctctttaac-actncacag 883
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 5172 accagaacagttaattcaaactaaaacaatacaaaggacagctctttaacaactccacag 5231
Query: 884 tngcctg-aaaccatatacactgcatttagggagttactatgttgactagaaaccctatt 942
| ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 5232 t-gcctgaaaaccatatacactgcattagggaagttactatgttgactagaaaccctatt 5290
Query: 943 gt 944
||
Sbjct: 5291 gt 5292
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6311
Number of Sequences: 1807
Number of extensions: 6311
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)