BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE07FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1539 1499 0.0
>3x_Contig1539
Length = 11016
Score = 1499 bits (756), Expect = 0.0
Identities = 793/802 (98%), Gaps = 4/802 (0%)
Strand = Plus / Plus
Query: 86 tgattacttttataccaaaaccaattaacaacgcggtgcgggaaattgctgtcaaattga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2906 tgattacttttataccaaaaccaattaacaacgcggtgcgggaaattgctgtcaaattga 2965
Query: 146 agaagaattatgtccagaaccatacttaacaacatccaagaattgccaggcgatgcttta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2966 agaagaattatgtccagaaccatacttaacaacatccaagaattgccaggcgatgcttta 3025
Query: 206 ttcgctatcaaacaacgtttagctgaagaccctagatctgctaaggtcgatttgggtatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3026 ttcgctatcaaacaacgtttagctgaagaccctagatctgctaaggtcgatttgggtatt 3085
Query: 266 ggtgcctatagagatgaggatggtaaaccatgggtattaccagctgttcgtaaagctgaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3086 ggtgcctatagagatgaggatggtaaaccatgggtattaccagctgttcgtaaagctgaa 3145
Query: 326 acattgatccattctgacgcatctttcaaccatgaatatttgggtattgccggtttacct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3146 acattgatccattctgacgcatctttcaaccatgaatatttgggtattgccggtttacct 3205
Query: 386 gctttgacttcaggtgcagccaaagtgatcttgggcgatgattcatctgctttggctgag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3206 gctttgacttcaggtgcagccaaagtgatcttgggcgatgattcatctgctttggctgag 3265
Query: 446 aaaagagttgtttctgctcagtctctatccggtactggtgccttacacattgcagctaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266 aaaagagttgtttctgctcagtctctatccggtactggtgccttacacattgcagctaaa 3325
Query: 506 ttcatccaaaagttcttacctgggaagttgttgtatgtttctgatccaacctgngctaac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3326 ttcatccaaaagttcttacctgggaagttgttgtatgtttctgatccaacctgggctaac 3385
Query: 566 catgtctctatctttgagtcacaaggtgtcaaaactgctacgtatccttactgggatgct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3386 catgtctctatctttgagtcacaaggtgtcaaaactgctacgtatccttactgggatgct 3445
Query: 626 gctaccaaatctttggatttggaaggatttatcaaggctatagaatcaagtccaagaggc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3446 gctaccaaatctttggatttggaaggatttatcaaggctatagaatcaagtccaagaggc 3505
Query: 686 tccgtgttcttgcttcatgcttgtgctcataatccaactggtttggatccaaccgaagct 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3506 tccgtgttcttgcttcatgcttgtgctcataatccaactggtttggatccaaccgaagct 3565
Query: 746 caatgggagaaaattctcagtgcctgtgtgaagaatgatatcattcccattgttcgactc 805
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3566 caatgggagaaaattctcagtgcctgtgtgaagaatgatatca-tcccattgttcgactc 3624
Query: 806 tgcctacccgggtttcgcatctgggagtctaccgaatgatgctttttggccgtcagactt 865
|||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 3625 tgcctaccagggtttcgcatctggtagtctaacgaatgatgctttt--gccgtcagactt 3682
Query: 866 ggtggggaagaaattcgctgaa 887
||| | ||||||||||||||||
Sbjct: 3683 ggt-gtgaagaaattcgctgaa 3703
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6259
Number of Sequences: 1807
Number of extensions: 6259
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)