BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE08FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1379 1602 0.0
>3x_Contig1379
Length = 6767
Score = 1602 bits (808), Expect = 0.0
Identities = 825/828 (99%), Gaps = 2/828 (0%)
Strand = Plus / Minus
Query: 89 caaccgaatttgttgaacggatgggatcaacaatcgtccacgcaagcttattatcatgcc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3711 caaccgaatttgttgaacggatgggatcaacaatcgtccacgcaagcttattatcatgcc 3652
Query: 149 aaccagccctcttcttcagaagctccgggattacttccattgtcgcatggcggatcgtct 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3651 aaccagccctcttcttcagaagctccgggattacttccattgtcgcatggcggatcgtct 3592
Query: 209 tcgaagttttcttcctttgcagacacaactgttgatgttaccgatgacgttaataatttg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3591 tcgaagttttcttcctttgcagacacaactgttgatgttaccgatgacgttaataatttg 3532
Query: 269 accagtttcttgaaagatactacaattaacgatatctcactcggttcaactagtagtatt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3531 accagtttcttgaaagatactacaattaacgatatctcactcggttcaactagtagtatt 3472
Query: 329 ccggcacaaaatctggatcctgttaacatggcaccacgtccgcaatctgctgtttacaac 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3471 ccggcacaaaatctggatcctgttaacatggcaccacgtccgcaatctgctgtttacaac 3412
Query: 389 caaccaaatctttggaacaatgatccaaatcaaaggctctcaaactttggtcaacagcac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3411 caaccaaatctttggaacaatgatccaaatcaaaggctctcaaactttggtcaacagcac 3352
Query: 449 gttcaacagaacccaatctcctcgtcacactctcaaccaagaagatctatttgggatact 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3351 gttcaacagaacccaatctcctcgtcacactctcaaccaagaagatctatttgggatact 3292
Query: 509 ggagctgaaaatacctttggtgttgcctctgctaacaattttgcttcgaatatctgggat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3291 ggagctgaaaatacctttggtgttgcctctgctaacaattttgcttcgaatatctgggat 3232
Query: 569 acacctacatctactccagcacttccgaacaccctgctatcttcccaagttgcagcaaca 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3231 acacctacatctactccagcacttccgaacaccctgctatcttcccaagttgcagcaaca 3172
Query: 629 tctgttgactcatatgaggaagtcctagccaagacctataagatgctttctccagacaat 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3171 tctgttgactcatatgaggaagtcctagccaagacctataagatgctttctccagacaat 3112
Query: 689 agtttcgttcccttggacaagctatatcaaacatcattgactcaaattaatgccaaatca 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3111 agtttcgttcccttggacaagctatatcaaacatcattgactcaaattaatgccaaatca 3052
Query: 749 gtactgtcgtatccccaattcatttccactttggtttccatgaagaattcatacaatact 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3051 gtactgtcgtatccccaattcatttccactttggtttccatgaagaattcatacaatact 2992
Query: 809 gaacttttgattgataacacgggtttattggcgtactgcagaatgggttctgttccagta 868
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2991 gaacttttgaatgataacacgggtttattggcgtactgcagaatgggttctgttccagta 2932
Query: 869 ccatcaggattgcccttcttat-atagacaaaatactttccctcatgc 915
|||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 2931 ccatcaggattg-ccttcttataatagacaaaatactttccctcatgc 2885
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5958
Number of Sequences: 1807
Number of extensions: 5958
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)