BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE08RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1111 1645 0.0
>3x_Contig1111
Length = 6610
Score = 1645 bits (830), Expect = 0.0
Identities = 861/869 (99%), Gaps = 2/869 (0%)
Strand = Plus / Plus
Query: 46 tggtgtctctgtcagctggacattaggttcagttctagtatccatatcattcatagcttg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1566 tggtgtctctgtcagctggacattaggttcagttctagtatccatatcattcatagcttg 1625
Query: 106 gcagatgggtccagttgagctctgtacttacgtttatccaaaaacaacaattgccccact 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1626 gcagatgggtccagttgagctctgtacttacgtttatccaaaaacaacaattgccccact 1685
Query: 166 tgttctaaaaaccttccagtgaatataatatttctgtgtttgttcttttctttgctctat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1686 tgttctaaaaaccttccagtgaatataatatttctgtgtttgttcttttctttgctctat 1745
Query: 226 tgcaaacaaaatgtgaaaaaagcaccctaatacagtaccaaatacacagatatttgtaat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1746 tgcaaacaaaatgtgaaaaaagcaccctaatacagtaccaaatacacagatatttgtaat 1805
Query: 286 gtaacaagctaggtgagtggtactttcgagctttgactaccgtagcgattccgaaagagt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1806 gtaacaagctaggtgagtggtactttcgagctttgactaccgtagcgattccgaaagagt 1865
Query: 346 taacaaaacaaacacaaatacttcgaacccattttcacgactgaacttatcttaactccc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1866 taacaaaacaaacacaaatacttcgaacccattttcacgactgaacttatcttaactccc 1925
Query: 406 tcgacccaaaaaaatcaaaactttaaatgtttgtgcagacgatattacgtcgatccctga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1926 tcgacccaaaaaaatcaaaactttaaatgtttgtgcagacgatattacgtcgatccctga 1985
Query: 466 catagggttgaacttttttttttccatagatatgataagcattcgcttgttgacctcaat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1986 catagggttgaacttttttttttccatagatatgataagcattcgcttgttgacctcaat 2045
Query: 526 gttggaagaacgaaagaactgctgattaaataaaaaggttaaaatacatatgctgtcatt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2046 gttggaagaacgaaagaactgctgattaaataaaaaggttaaaatacatatgctgtcatt 2105
Query: 586 atttctacatatttaggtgcagtattaagactttgttttctttgtcttttttgtcagttg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2106 atttctacatatttaggtgcagtattaagactttgttttctttgtcttttttgtcagttg 2165
Query: 646 ttccgtgatagaaggtcctttcctcttagtagatttagtggtctttgtggacttgttctt 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2166 ttccgtgatagaaggtcctttcctcttagtagatttagtggtctttgtggacttgttctt 2225
Query: 706 cttatcaaacttagcttggaattctttacgggaactttctcctagtttattcaatgctaa 765
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2226 cttatcaaacttagcttggaattctttacgggacttttctcctagtttattcaatgctaa 2285
Query: 766 tctcttctcgatgtagtctttgttttcctcttcatctatagtttctagccattccaatag 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 tctcttctcgatgtagtctttgttttcctcttcatctatagtttctagccattccaatag 2345
Query: 826 nnttgatttcttcaccgtagccagcgtcttccttttgtggtgtctctagtactatccgta 885
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2346 -tttgatttcttcaccgtagccagcgtcttccttttgtggtgtctctagtactatcggta 2404
Query: 886 tcccctgaaaggatttctgagtggccaat 914
||||||| ||||| |||||||||| ||||
Sbjct: 2405 tcccctg-aaggaattctgagtgggcaat 2432
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8816
Number of Sequences: 1807
Number of extensions: 8816
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)