BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE09FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1688 1302 0.0
>3x_Contig1688
Length = 18058
Score = 1302 bits (657), Expect = 0.0
Identities = 736/752 (97%), Gaps = 9/752 (1%)
Strand = Plus / Plus
Query: 87 ccacaccgctgaacgatgattcgtcatattgtgtcacaatccaatcaaaaatgtcattgc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3960 ccacaccgctgaacgatgattcgtcatattgtgtcacaatccaatcaaaaatgtcattgc 4019
Query: 147 agtcggcagtcagaacttgacttcgatcttccataacccagtattttgatattccttcaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4020 agtcggcagtcagaacttgacttcgatcttccataacccagtattttgatattccttcaa 4079
Query: 207 gatatcttgtcagtaatttcattgaggtcgaagatgtgtcaaagcttggagctaatagtg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4080 gatatcttgtcagtaatttcattgaggtcgaagatgtgtcaaagcttggagctaatagtg 4139
Query: 267 aggaacccaagaattgagttagtctttcaaggctggcagttggaatttcattttcattgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4140 aggaacccaagaattgagttagtctttcaaggctggcagttggaatttcattttcattgt 4199
Query: 327 tttccagatatgtaatcaaattcggcaatgttctgttcagcattggcaatgataactttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4200 tttccagatatgtaatcaaattcggcaatgttctgttcagcattggcaatgataactttt 4259
Query: 387 tcgaataaagaataaatgatgataaaggatcaaatgcttttgatactgaatgtacttgta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4260 tcgaataaagaataaatgatgataaaggatcaaatgcttttgatactgaatgtacttgta 4319
Query: 447 gtgcgaactcaaaacctatttctatcatttcggaaatagggatgcttcctgcttcaggct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4320 gtgcgaactcaaaacctatttctatcatttcggaaatagggatgcttcctgcttcaggct 4379
Query: 507 ttgcatggtgacttaaaaattcatcctgatgtgaagtctgctgagtatgttctgcaagcc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4380 ttgcatggtgacttaaaaattcatcctgatgtgaagtctgctgagtatgttctgcaagcc 4439
Query: 567 tctgcat-aaggttgataaaactttctctggtggtaaaatatccataatgatgtgtcgaa 625
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4440 tctgcataaaggttgataaaactttctctgttggtaaaatatccataatgatgtgtcgaa 4499
Query: 626 gtaaagaatctttgagtgaaatcatgccttccattaccgagaaaatctgagcgttctgac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4500 gtaaagaatctttgagtgaaatcatgccttccattaccgagaaaatctgagcgttctgac 4559
Query: 686 caaaatcgataaccgaggatgattaaaggaatatctcttttaaatcttggacagtagtcg 745
||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 4560 caaaatcgataaccgaggatgataaaaggaatatctc-tttaaatcttgacaagtagtcg 4618
Query: 746 gtggtaagtttctttgcccaacgagacttttcgatggtacggagcaccttggattgccct 805
||| |||||||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 4619 gtg--tagtttctttggccaacgagac-tttcgatggtacggagcacc-tggattgccc- 4673
Query: 806 tatcaatgaaaggtagctggaaattgcacttt 837
||||||||||| |||||| |||||||||||||
Sbjct: 4674 tatcaatgaaa-gtagct-gaaattgcacttt 4703
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7615
Number of Sequences: 1807
Number of extensions: 7615
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)