BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE09RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig637 385 e-106
>3x_Contig637
Length = 2206
Score = 385 bits (194), Expect = e-106
Identities = 226/232 (97%), Gaps = 4/232 (1%)
Strand = Plus / Minus
Query: 595 gtctgtatttctcaggtgaatgcctgatggtagaacagtatattctaacccttncaaagt 654
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2206 gtctgtatttctcaggtgaatgcctgatggtagaacagtatattctaacccttccaaagt 2147
Query: 655 cttggcatcaccattggtccataccaacgtattacctttaagtacatcaaaattcatgga 714
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2146 cttggcatcaccattggtccataccaacgtattacctttaagtacatc-aaattcatgga 2088
Query: 715 caaatataaccattgtaactactgtggaatttggattatgcgcccagacttttggcactc 774
||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct: 2087 caaatataaccattgtaactactgtggaa-ttggattatgcg-ccagactttt-gcactc 2031
Query: 775 gctgaacttcccatatcctactgtttcgttggttgnccgtggatgttcaact 826
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2030 gctgaacttcccatatcctactgtttcgttggttgtccgtggatgttcaact 1979
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6466
Number of Sequences: 1807
Number of extensions: 6466
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)