BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE11FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1541 1425 0.0
>3x_Contig1541
Length = 10565
Score = 1425 bits (719), Expect = 0.0
Identities = 796/810 (98%), Gaps = 10/810 (1%)
Strand = Plus / Minus
Query: 87 cggaggtgagcgaggagtgtggtgagtggaaggggtcctgatgcgaatagctccaagctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 cggaggtgagcgaggagtgtggtgagtggaaggggtcctgatgcgaatagctccaagctt 1530
Query: 147 tttttttttttttcactgtccattctttgtccttttcaaggattgtctgtccttcgagta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 tttttttttttttcactgtccattctttgtccttttcaaggattgtctgtccttcgagta 1470
Query: 207 attcgacctcaatgagatcatgcgtcacgcatctctttgaatcctatatttttattatgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 attcgacctcaatgagatcatgcgtcacgcatctctttgaatcctatatttttattatgt 1410
Query: 267 ctctttcttttaaccaattgcaggatgttgaaattataggatatcatcttgacctgggtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 ctctttcttttaaccaattgcaggatgttgaaattataggatatcatcttgacctgggtt 1350
Query: 327 acagttctcataattcaagaacttcaagatgtgccacaaagcggcagacatgatggcacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 acagttctcataattcaagaacttcaagatgtgccacaaagcggcagacatgatggcacc 1290
Query: 387 aagacctggaccaatccagtaaatccaatggtagttagggaaagaggcagcagcgataca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 aagacctggaccaatccagtaaatccaatggtagttagggaaagaggcagcagcgataca 1230
Query: 447 tggaccgaaagatctggctgggttcaaaccggcaccggtgtagtaaacacagatcaagtg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 tggaccgaaagatctggctgggttcaaaccggcaccggtgtagtaaacacagatcaagtg 1170
Query: 507 accaacaaacaatgcaataccaatggcgaatggagccattggggtagccttatgcttttc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 accaacaaacaatgcaataccaatggcgaatggagccattggggtagccttatgcttttc 1110
Query: 567 aacggccatgaacaaaacggtggtacataggattgcggtaccgaaggcttccaagaaaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 aacggccatgaacaaaacggtggtacataggattgcggtaccgaaggcttccaagaaaac 1050
Query: 627 acctctggatctggaagcaccaccacctagaccgttagcgaataagatttcacctggggt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 acctctggatctggaagcaccaccacctagaccgttagcgaataagatttcacctggggt 990
Query: 687 catggcagaagcagcacctgcagcagccatacccggcaaccatttgactgatccacatga 746
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 989 catggcagaagcagcacctgcagcagccata-ccggcaaccatttgactgatccacatga 931
Query: 747 caagagctcttggccatgggatgacgtttgtcaagacc-aagtcaaag-aacagctgggt 804
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 930 caagagctcttggccatgggatgacgtttgtcaagaccaaagtcaaagtaacagctgggt 871
Query: 805 tcaaatt-ccaccaga-actttgaagaagataaaaac-gcaaac-tgacggagaacccga 860
||||||| |||||||| ||| |||||||||| ||||| |||||| |||||||||| ||||
Sbjct: 870 tcaaattaccaccagagactctgaagaagatgaaaacggcaaacatgacggagaaaccga 811
Query: 861 a--ccaaagcgat-ttgatcaattgacctg 887
| |||||||||| |||||||||||||||
Sbjct: 810 aacccaaagcgatcatgatcaattgacctg 781
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,162
Number of Sequences: 1807
Number of extensions: 15162
Number of successful extensions: 2230
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)