BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE11RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1610 0.0
>3x_Contig1771
Length = 25932
Score = 1610 bits (812), Expect = 0.0
Identities = 859/872 (98%), Gaps = 2/872 (0%)
Strand = Plus / Plus
Query: 47 tgtatagacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgtggc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18857 tgtatagacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgtggc 18916
Query: 107 aaagcaagtgacatttataagatgagaaagtgcagtatagtggtgataatatttaagttt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18917 aaagcaagtgacatttataagatgagaaagtgcagtatagtggtgataatatttaagttt 18976
Query: 167 cttacaaaataaaagagtgtaggtatataaaaataatttataggtagaaacacacaaaac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18977 cttacaaaataaaagagtgtaggtatataaaaataatttataggtagaaacacacaaaac 19036
Query: 227 agaagagaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatggaaac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19037 agaagagaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatggaaac 19096
Query: 287 aaagaaaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctgacatttg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19097 aaagaaaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctgacatttg 19156
Query: 347 tatattaaaaattgatcaattagaaacaaatgaatatggtttgttcgtcttccctcttct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19157 tatattaaaaattgatcaattagaaacaaatgaatatggtttgttcgtcttccctcttct 19216
Query: 407 ttttttttggatctttacttctgccaattaacggttgtaaacaattcccatcgcctaata 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19217 ttttttttggatctttacttctgccaattaacggttgtaaacaattcccatcgcctaata 19276
Query: 467 ataatatcctcaaagctcagtcctctgtttcaaggtaaattcaaatgaagttggagataa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19277 ataatatcctcaaagctcagtcctctgtttcaaggtaaattcaaatgaagttggagataa 19336
Query: 527 gggggtgaagagtgggtttggggcgtgcgtgtctttatttacaagacgacacacttcttt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19337 gggggtgaagagtgggtttggggcgtgcgtgtctttatttacaagacgacacacttcttt 19396
Query: 587 tttttgctagacttagtcttaggtttgctcttaccttgtttaccgaccaaagaagctctt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19397 tttttgctagacttagtcttaggtttgctcttaccttgtttaccgaccaaagaagctctt 19456
Query: 647 gtagcagcctcgaagacttctctgacaccgtaaccggtcttggcagaacattcgatgtag 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19457 gtagcagcctcgaagacttctctgacaccgtaaccggtcttggcagaacattcgatgtag 19516
Query: 707 tcaacagcaccgatttggtcagcgacttcttgtgcttgagcctgagacacaggttgtaat 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19517 tcaacagcaccgatttggtcagcgacttcttgtgcttgagcctgagacacaggttgtaat 19576
Query: 767 ccttgagctcttaggtctttcacaactttgagatcatttctcaaatctgctttacaacca 826
|||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 19577 ccttgagctcttagttcttcaacaacttgaggatcatttctcaaatctgctttacaacca 19636
Query: 827 accaagatgattgggacacccttgacaaaagtgtaaaacttcagagatccattttttcat 886
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 19637 accaagatgattggaaca-ccttgacaaaagtgtaaaacttcagagatccatttttccat 19695
Query: 887 cacggttttttagggaatctgtcaaatcaatt 918
||| ||||| || |||||||| ||||||||||
Sbjct: 19696 cac-gttttctaaggaatctggcaaatcaatt 19726
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9566
Number of Sequences: 1807
Number of extensions: 9566
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)