BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE12FM1.SCF screened BAC_end
(991 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1154 545 e-155
>3x_Contig1154
Length = 6277
Score = 545 bits (275), Expect = e-155
Identities = 347/362 (95%), Gaps = 10/362 (2%)
Strand = Plus / Plus
Query: 435 actccgagactctggcattcagatcagaaacggacggctattcagccgatactagtgaag 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 actccgagactctggcattcagatcagaaacggacggctattcagccgatactagtgaag 77
Query: 495 ctgctaactgcgatgaatgcatacaggattttgaatcttttgaccctgttgaagagtgcg 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 ctgctaactgcgatgaatgcatacaggattttgaatcttttgaccctgttgaagagtgcg 137
Query: 555 cgaagctacgacaacgtcaacctgatggcgtccccttcattaaaggtcctgaaatctggg 614
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cgaag-tacgacaacgtcaacctgatggcgtccccttcattaaaggtcctgaaatctggg 196
Query: 615 aaaaaagaagacagctttggctgaaagtgacgcccgaanacactttggctcactcagaga 674
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 197 aaaaaagaagacagctttggctgaaagtgacgcccgaaaacactttggctcactcagaga 256
Query: 675 agtcaagagcaatgtttttcagatatcagccccanagaaatattgggcctatctatanac 734
|||||||||||||| |||||||||||||| |||| ||||||| |||||||||||||| ||
Sbjct: 257 agtcaagagcaatg-ttttcagatatcag-cccaaagaaata-tgggcctatctataaac 313
Query: 735 gttttggtttatggaagacgcaccatctaagggaaaaacctaaaacctttcaagatgtca 794
|||| | |||||||||||||| ||||||| ||||||||||||| | ||||||||||||
Sbjct: 314 gttt--ggttatggaagacgca-catctaa-ggaaaaacctaaa--ccttcaagatgtca 367
Query: 795 tt 796
||
Sbjct: 368 tt 369
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5196
Number of Sequences: 1807
Number of extensions: 5196
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 991
length of database: 10,358,551
effective HSP length: 16
effective length of query: 975
effective length of database: 10,329,639
effective search space: 10071398025
effective search space used: 10071398025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)