BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZE12RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1674 1433 0.0
>3x_Contig1674
Length = 12281
Score = 1433 bits (723), Expect = 0.0
Identities = 769/779 (98%), Gaps = 4/779 (0%)
Strand = Plus / Minus
Query: 48 cttcatcctcaagaagcatagtttggaagtatctgagagtggtgatgaactagagaatga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9312 cttcatcctcaagaagcatagtttggaagtatctgagagtggtgatgaactagagaatga 9253
Query: 108 aacacccaagaaaaagaagggatgctgtggtggtaagaatggtggatgttccagtaagaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9252 aacacccaagaaaaagaagggatgctgtggtggtaagaatggtggatgttccagtaagaa 9193
Query: 168 actggacgaatttggcatgccagtgaagaagaacaagggatgctgtgggggtgcgtgtaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9192 actggacgaatttggcatgccagtgaagaagaacaagggatgctgtgggggtgcgtgtaa 9133
Query: 228 atccaagaaggcgcaagatcctgcacctgtggtagaagttggttacgataacgaaataga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9132 atccaagaaggcgcaagatcctgcacctgtggtagaagttggttacgataacgaaataga 9073
Query: 288 tttcactgattcttttaaaaattgatatcaccatctttagttgttgtatcaatcaataag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9072 tttcactgattcttttaaaaattgatatcaccatctttagttgttgtatcaatcaataag 9013
Query: 348 gggaggtggagcctcacatatttcgggggaaaaaaaagaggacgtgacgtctggccactt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9012 gggaggtggagcctcacatatttcgggggaaaaaaaagaggacgtgacgtctggccactt 8953
Query: 408 caataattcggtaaaagcagtaatcttagaactcatattcaaaattcagggacacatagg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8952 caataattcggtaaaagcagtaatcttagaactcatattcaaaattcagggacacatagg 8893
Query: 468 gtactttcaatattgtcttatttatttgttaactaattaattgtcatttcatttttaatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8892 gtactttcaatattgtcttatttatttgttaactaattaattgtcatttcatttttaatt 8833
Query: 528 actgttattttagttgtgccggatctgttcaaacctatgcattctttatcaacatattgt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8832 actgttattttagttgtgccggatctgttcaaacctatgcattctttatcaacatattgt 8773
Query: 588 gcatatacgagacatctataattctgtatagctgtggcctgtgttccgtaatattcgcag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8772 gcatatacgagacatctataattctgtatagctgtggcctgtgttccgtaatattcgcag 8713
Query: 648 gagcgcatcaatatggcttaaaaagattgaatatcgaaaacgaactcgatttattcgttt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8712 gagcgcatcaatatggcttaaaaagattgaatatcgaaaacgaactcgatttattcgttt 8653
Query: 708 ccacttgaggcttttttgcgggataaactgtttttaaaattccgtttggaatagttcctc 767
||||| |||| ||||||| |||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 8652 ccactgaaggc-tttttgc-ggattaactgtttttcaaattccgttttgaatagttcctc 8595
Query: 768 tagatcgacacctttccttgctcgttctagctcacgggctttcaacgaggataaagctt 826
||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct: 8594 tagatcgacacctttccttgctcgttctagctcacggtc-ttcaacga-gataaagctt 8538
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7670
Number of Sequences: 1807
Number of extensions: 7670
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)