BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF01FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1149 1518 0.0
>3x_Contig1149
Length = 5603
Score = 1518 bits (766), Expect = 0.0
Identities = 811/824 (98%), Gaps = 2/824 (0%)
Strand = Plus / Plus
Query: 86 ctttcctcaaggactgcttaaaggtctgttcaaatcgcaaatctggcaatgacgccttta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1991 ctttcctcaaggactgcttaaaggtctgttcaaatcgcaaatctggcaatgacgccttta 2050
Query: 146 ctgaaactttctcatccacacgggcaattcctttaggcatggtaaaaggctgattatctg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2051 ctgaaactttctcatccacacgggcaattcctttaggcatggtaaaaggctgattatctg 2110
Query: 206 tggataactcaccttattttaaattcggtgatgtgtaattgtacttgatatttcgcctat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2111 tggataactcaccttattttaaattcggtgatgtgtaattgtacttgatatttcgcctat 2170
Query: 266 tgcgtgggatcagctttctaatatgttcaaaaaccgatttgaaggtcctacaaagaagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2171 tgcgtgggatcagctttctaatatgttcaaaaaccgatttgaaggtcctacaaagaagaa 2230
Query: 326 ataatgctaataagaaagaaatggggccactattgttcgaagaagttaactataggtaat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2231 ataatgctaataagaaagaaatggggccactattgttcgaagaagttaactataggtaat 2290
Query: 386 aaaggctatatatacatgactccgagcaatattattcttagctgagcctatttgaaacag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2291 aaaggctatatatacatgactccgagcaatattattcttagctgagcctatttgaaacag 2350
Query: 446 tattgatggaatagtcctatgcacgtgaccaaacgctgccaaagctcaaaaattttccaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2351 tattgatggaatagtcctatgcacgtgaccaaacgctgccaaagctcaaaaattttccaa 2410
Query: 506 ctgaacaaaagtgaaaaattcataaaacaataatcgaatgcaccaagggaacgagaacaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2411 ctgaacaaaagtgaaaaattcataaaacaataatcgaatgcaccaagggaacgagaacaa 2470
Query: 566 atcatttcgttgctgtagtttggtcaatactctggtatttgattgagcaaggagcaggtc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2471 atcatttcgttgctgtagtttggtcaatactctggtatttgattgagcaaggagcaggtc 2530
Query: 626 atatcttagggagaaatcagagtttaatactgcgaaagaacaaatgagcgaagaaggtcc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2531 atatcttagggagaaatcagagtttaatactgcgaaagaacaaatgagcgaagaaggtcc 2590
Query: 686 ccaagtaaaaattagagaaagcaccaagggacacgttgactttatactttctaatgtcga 745
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 2591 ccaagtaaaaattagagaagcaaccaaggacaacgttgactttatactttctaatgtcga 2650
Query: 746 cttggctttagcanactcgttacgtagagtcatgatatctgagatttctacactagccat 805
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2651 cttggctttagcaaactcgttacgtagagtcatgatatctgagattcctacactagccat 2710
Query: 806 cgattctgttgagattgaaact-atactactgngttggcagatgaatttattgcgcatag 864
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 2711 cgattctgttgagattgaaactaatactactgtgttggcagatgaatttattgcgcatag 2770
Query: 865 acttgggttaaattcattacaaag-gcagacattgatcaagttg 907
||||||||||| | |||||||||| |||||||||||||||||||
Sbjct: 2771 acttgggttaattccattacaaagtgcagacattgatcaagttg 2814
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6475
Number of Sequences: 1807
Number of extensions: 6475
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)