BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC50ZF01RM1.SCF screened BAC_end (900 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1176 1576 0.0 >3x_Contig1176 Length = 5769 Score = 1576 bits (795), Expect = 0.0 Identities = 841/853 (98%), Gaps = 3/853 (0%) Strand = Plus / Minus Query: 49 acaatagcattggtaaattctacaccgtagtcttcgaactcttctaaattaccattatca 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2553 acaatagcattggtaaattctacaccgtagtcttcgaactcttctaaattaccattatca 2494 Query: 109 gtactactttctttctcctgaatattgaattgataatcttttttcaaagacgcctcatca 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2493 gtactactttctttctcctgaatattgaattgataatcttttttcaaagacgcctcatca 2434 Query: 169 gattgcatgatttatgagctgtatcttgaacagtattgtctttcctgtttttacgctcgt 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2433 gattgcatgatttatgagctgtatcttgaacagtattgtctttcctgtttttacgctcgt 2374 Query: 229 tgctggtcttagtactatcacgaaacttatttaaatccaaatgcttattcaataaccatg 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2373 tgctggtcttagtactatcacgaaacttatttaaatccaaatgcttattcaataaccatg 2314 Query: 289 gtctgagacaaaataggaacccttggacttgtatttatatctgttgaatcgatcaagctg 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2313 gtctgagacaaaataggaacccttggacttgtatttatatctgttgaatcgatcaagctg 2254 Query: 349 ggaaagacgctcgtgatgtatctaacctgctgataacctccagttgaactcagagtgatc 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2253 ggaaagacgctcgtgatgtatctaacctgctgataacctccagttgaactcagagtgatc 2194 Query: 409 ctccaagatgaaaaaaaaaaactcttatcttgcgggctctaaaattaacactaaactcta 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2193 ctccaagatgaaaaaaaaaaactcttatcttgcgggctctaaaattaacactaaactcta 2134 Query: 469 gtactctggaagtttgtctactccacaaaactcaccccttctgttgaatttactaagtgt 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2133 gtactctggaagtttgtctactccacaaaactcaccccttctgttgaatttactaagtgt 2074 Query: 529 aaacctcagttgcaaaatggagtagtttgattgagttgcttgcccgcttggtttctttct 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2073 aaacctcagttgcaaaatggagtagtttgattgagttgcttgcccgcttggtttctttct 2014 Query: 589 ttctttcgctactcttagcactccaaaatcagccatacacagactaacaatcagtacatt 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2013 ttctttcgctactcttagcactccaaaatcagccatacacagactaacaatcagtacatt 1954 Query: 649 ctccgacaatcctgtcaaaagtgacagatgcgggatcaaatagcactcctggtatatcgg 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1953 ctccgacaatcctgtcaaaagtgacagatgcgggatcaaatagcactcctggtatatcgg 1894 Query: 709 atattgataccactcctcgtgatacgggtttatgaaactttagatgagtcgatttgacag 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1893 atattgataccactcctcgtgatacgggtttatgaaactttagatgagtcgatttgacag 1834 Query: 769 gtttcttctagttgccagatttcctatactgggtaacttt-aaatgaaaattncgtaatg 827 |||||| |||||||||||| |||||||||| | |||||| ||||||||||| ||||||| Sbjct: 1833 gtttctcctagttgccagaattcctatact-gtaaactttaaaatgaaaattccgtaatg 1775 Query: 828 tcgacgcattgtgtgaaaaaatcanaattcgagattaggatcataaggcggcattattct 887 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| Sbjct: 1774 cggacgcattgtgtg-aaaaatcagaattcgagattaggatcataaggcggcattagtct 1716 Query: 888 ttctcgatttgga 900 ||||||||||||| Sbjct: 1715 ttctcgatttgga 1703 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,560 Number of Sequences: 1807 Number of extensions: 11560 Number of successful extensions: 80 Number of sequences better than 1.0e-20: 1 length of query: 900 length of database: 10,358,551 effective HSP length: 16 effective length of query: 884 effective length of database: 10,329,639 effective search space: 9131400876 effective search space used: 9131400876 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)