BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC50ZF01RM1.SCF screened BAC_end
         (900 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1176                                                        1576   0.0  

>3x_Contig1176 
          Length = 5769

 Score = 1576 bits (795), Expect = 0.0
 Identities = 841/853 (98%), Gaps = 3/853 (0%)
 Strand = Plus / Minus

                                                                        
Query: 49   acaatagcattggtaaattctacaccgtagtcttcgaactcttctaaattaccattatca 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 acaatagcattggtaaattctacaccgtagtcttcgaactcttctaaattaccattatca 2494

                                                                        
Query: 109  gtactactttctttctcctgaatattgaattgataatcttttttcaaagacgcctcatca 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 gtactactttctttctcctgaatattgaattgataatcttttttcaaagacgcctcatca 2434

                                                                        
Query: 169  gattgcatgatttatgagctgtatcttgaacagtattgtctttcctgtttttacgctcgt 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 gattgcatgatttatgagctgtatcttgaacagtattgtctttcctgtttttacgctcgt 2374

                                                                        
Query: 229  tgctggtcttagtactatcacgaaacttatttaaatccaaatgcttattcaataaccatg 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 tgctggtcttagtactatcacgaaacttatttaaatccaaatgcttattcaataaccatg 2314

                                                                        
Query: 289  gtctgagacaaaataggaacccttggacttgtatttatatctgttgaatcgatcaagctg 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 gtctgagacaaaataggaacccttggacttgtatttatatctgttgaatcgatcaagctg 2254

                                                                        
Query: 349  ggaaagacgctcgtgatgtatctaacctgctgataacctccagttgaactcagagtgatc 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2253 ggaaagacgctcgtgatgtatctaacctgctgataacctccagttgaactcagagtgatc 2194

                                                                        
Query: 409  ctccaagatgaaaaaaaaaaactcttatcttgcgggctctaaaattaacactaaactcta 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2193 ctccaagatgaaaaaaaaaaactcttatcttgcgggctctaaaattaacactaaactcta 2134

                                                                        
Query: 469  gtactctggaagtttgtctactccacaaaactcaccccttctgttgaatttactaagtgt 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2133 gtactctggaagtttgtctactccacaaaactcaccccttctgttgaatttactaagtgt 2074

                                                                        
Query: 529  aaacctcagttgcaaaatggagtagtttgattgagttgcttgcccgcttggtttctttct 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2073 aaacctcagttgcaaaatggagtagtttgattgagttgcttgcccgcttggtttctttct 2014

                                                                        
Query: 589  ttctttcgctactcttagcactccaaaatcagccatacacagactaacaatcagtacatt 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2013 ttctttcgctactcttagcactccaaaatcagccatacacagactaacaatcagtacatt 1954

                                                                        
Query: 649  ctccgacaatcctgtcaaaagtgacagatgcgggatcaaatagcactcctggtatatcgg 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1953 ctccgacaatcctgtcaaaagtgacagatgcgggatcaaatagcactcctggtatatcgg 1894

                                                                        
Query: 709  atattgataccactcctcgtgatacgggtttatgaaactttagatgagtcgatttgacag 768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1893 atattgataccactcctcgtgatacgggtttatgaaactttagatgagtcgatttgacag 1834

                                                                        
Query: 769  gtttcttctagttgccagatttcctatactgggtaacttt-aaatgaaaattncgtaatg 827
            |||||| |||||||||||| |||||||||| |  |||||| ||||||||||| |||||||
Sbjct: 1833 gtttctcctagttgccagaattcctatact-gtaaactttaaaatgaaaattccgtaatg 1775

                                                                        
Query: 828  tcgacgcattgtgtgaaaaaatcanaattcgagattaggatcataaggcggcattattct 887
              ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 1774 cggacgcattgtgtg-aaaaatcagaattcgagattaggatcataaggcggcattagtct 1716

                         
Query: 888  ttctcgatttgga 900
            |||||||||||||
Sbjct: 1715 ttctcgatttgga 1703


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,560
Number of Sequences: 1807
Number of extensions: 11560
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)