BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF02FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1227 1564 0.0
>3x_Contig1227
Length = 6330
Score = 1564 bits (789), Expect = 0.0
Identities = 815/821 (99%), Gaps = 2/821 (0%)
Strand = Plus / Minus
Query: 86 tttcttccattcaactaatctagcaaaatcttggttttcttcattacctgaatgggatac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3374 tttcttccattcaactaatctagcaaaatcttggttttcttcattacctgaatgggatac 3315
Query: 146 gtcccaggatcctacagtcattaatccattcaaactaacatgcttggcctccttgataag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3314 gtcccaggatcctacagtcattaatccattcaaactaacatgcttggcctccttgataag 3255
Query: 206 atattcaacaatcgaatacacctctacttctgcgaacaatccggatttttgttcctctcc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3254 atattcaacaatcgaatacacctctacttctgcgaacaatccggatttttgttcctctcc 3195
Query: 266 agaagtgttgatctgaacattacacgtgatcacgggtgcatccgggttccacttccctct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3194 agaagtgttgatctgaacattacacgtgatcacgggtgcatccgggttccacttccctct 3135
Query: 326 ggcttcttccaacttcttcgccttctttaacgaatcaacggtctctaccgagtaaaggtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3134 ggcttcttccaacttcttcgccttctttaacgaatcaacggtctctaccgagtaaaggtt 3075
Query: 386 cgcaatcttagccaaatccttgcatttgttactttgcaaaccgccgatgaaatgccattt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3074 cgcaatcttagccaaatccttgcatttgttactttgcaaaccgccgatgaaatgccattt 3015
Query: 446 aatatcctggggtaaaatctcactcttcgtaatcatctcttgaacgtagttttccccaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 aatatcctggggtaaaatctcactcttcgtaatcatctcttgaacgtagttttccccaaa 2955
Query: 506 gtgtctcacaccataatcatacaaaattttgatgtctgcagcaggcttatacttggaaac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 gtgtctcacaccataatcatacaaaattttgatgtctgcagcaggcttatacttggaaac 2895
Query: 566 agctagtaattcaacgttaacattaccgacttcctgagcagtggcattgatcttatcttt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2894 agctagtaattcaacgttaacattaccgacttcctgagcagtggcattgatcttatcttt 2835
Query: 626 catcgtctgataagccccaatcagctcttctttcctcacagcatcgtaactgatatcact 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2834 catcgtctgataagccccaatcagctcttctttcctcacagcatcgtaactgatatcact 2775
Query: 686 agacattcttcttgctactatcagtcccctgcgaatcattcaaaagcacctat-atatgg 744
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 2774 agacattcttcttgctactatcagtcccctgcgaatcattcaaaagca-ctataatatgg 2716
Query: 745 gtaaaaccaaaatttaaagtaagtgctcatcacttaatcttatcagatgttgtgaatcat 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2715 gtaaaaccaaaatttaaagtaagtgctcatcacttaatcttatcagatgttgtgaatcat 2656
Query: 805 cgagcaaattcctttatatcttgaagccgttctttggaaaaagtgttgatacttgtcacg 864
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 2655 cgagcaaattcctttatatcttgaagccgttcttggaaaaaagtgttgatacttgtcacg 2596
Query: 865 tgatgtaggggagctgccaaaaagacaaatcgaaaagggaa 905
||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 2595 tgatgtaggggagctgcaaaaaagacaaatcgaaaatggaa 2555
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6315
Number of Sequences: 1807
Number of extensions: 6315
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)