BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF03RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1793 1620 0.0
>3x_Contig1793
Length = 40499
Score = 1620 bits (817), Expect = 0.0
Identities = 877/892 (98%), Gaps = 4/892 (0%)
Strand = Plus / Plus
Query: 47 tttgaagtgacggtttggtggaggaacaaaacgacaaaactctatttaagccatcctgta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12534 tttgaagtgacggtttggtggaggaacaaaacgacaaaactctatttaagccatcctgta 12593
Query: 107 attttgttgtcgtcgttaactcttgcaaatgtttaacatcataattgatatctagctgtc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12594 attttgttgtcgtcgttaactcttgcaaatgtttaacatcataattgatatctagctgtc 12653
Query: 167 tttccaacaacttagaattccatccacccaaaatgattgttaaactttcacctgaaacaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12654 tttccaacaacttagaattccatccacccaaaatgattgttaaactttcacctgaaacaa 12713
Query: 227 ataggtaatcaatatgtttggaagaatgaattgtctcataaactcctaaataatcatcga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12714 ataggtaatcaatatgtttggaagaatgaattgtctcataaactcctaaataatcatcga 12773
Query: 287 attcagtttcattcgagttcatatagagatagccccaagtcattatagctagctcatcat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12774 attcagtttcattcgagttcatatagagatagccccaagtcattatagctagctcatcat 12833
Query: 347 tgaatagcttgtcttttatggcatcctttattgaaatagttatggacttcctgttaacag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12834 tgaatagcttgtcttttatggcatcctttattgaaatagttatggacttcctgttaacag 12893
Query: 407 catcaagcgaatccaaagttctatactttaaaagttcacaatatgctttcaaagacaact 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12894 catcaagcgaatccaaagttctatactttaaaagttcacaatatgctttcaaagacaact 12953
Query: 467 ctctacaactaccagataaatattgctttgttatcttctgtaagattcttgaaacaacag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12954 ctctacaactaccagataaatattgctttgttatcttctgtaagattcttgaaacaacag 13013
Query: 527 ttccaaattcaacagaatgtagtaactgcaatctggggattaaagatgccaaaaggtaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13014 ttccaaattcaacagaatgtagtaactgcaatctggggattaaagatgccaaaaggtaca 13073
Query: 587 ctaaaaccggtataattgcggatggattattcgattcctgatcaaagtcagttgccagta 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13074 ctaaaaccggtataattgcggatggattattcgattcctgatcaaagtcagttgccagta 13133
Query: 647 tttgggacacagaatgtgaacttaacccaattcttgctccaataatcccgaatgaattta 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13134 tttgggacacagaatgtgaacttaacccaattcttgctccaataatcccgaatgaattta 13193
Query: 707 cgagagagtccgtatagatgtcangcgcactttgtttagtattgattcgttttaaagtgg 766
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 13194 cgagagagtccgtatagatgtcaggcggactttgtttagtattgattcgttttaaagtgg 13253
Query: 767 atgctagaatattctcggatttcatgataacatcgtttttagccgtagtgacaagaacta 826
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 13254 atgctagaatattctcggatttcatgataacatcgtttttagcgtaagtgacaagaacta 13313
Query: 827 ggaataacttggagaaaacagggatcgtctttggaag-aacattaatctcatgtattatc 885
|||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||||
Sbjct: 13314 ggaataacttggagaaaaca-ggatcgtccttggaagaaacattattctcatgtattatc 13372
Query: 886 tcgtt-aataagacaagc-ataccgaaaatacagtggattctgagagatgct 935
||||| ||||||| ||| |||||||| ||||||| ||||||||||||||||
Sbjct: 13373 tcgttaaataagaacagcaataccgaagatacagtagattctgagagatgct 13424
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6710
Number of Sequences: 1807
Number of extensions: 6710
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)