BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF04RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig689 1570 0.0
>3x_Contig689
Length = 3037
Score = 1570 bits (792), Expect = 0.0
Identities = 818/826 (99%), Gaps = 1/826 (0%)
Strand = Plus / Minus
Query: 46 cgttgaagacaccagtttgtttgtttgtgacaatgttgtccaattggaaaataagttcca 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 cgttgaagacaccagtttgtttgtttgtgacaatgttgtccaattggaaaataagttcca 880
Query: 106 gagggtcatcgctatcttggaacaatgagatatattgagttatatctttcgatgactcac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gagggtcatcgctatcttggaacaatgagatatattgagttatatctttcgatgactcac 820
Query: 166 tgacaatggtagcctcatcataaggttccacggtagaagtcctccaaacagtaacgttgt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tgacaatggtagcctcatcataaggttccacggtagaagtcctccaaacagtaacgttgt 760
Query: 226 tgataaaaatgtgacctaaacgatcgtgctgtatcccagtaatatttgtcgagagttcca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tgataaaaatgtgacctaaacgatcgtgctgtatcccagtaatatttgtcgagagttcca 700
Query: 286 agatgatcttattataaggggaaccagtgtatggcttaaacgacgcctgagctggatgac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agatgatcttattataaggggaaccagtgtatggcttaaacgacgcctgagctggatgac 640
Query: 346 cccaagaatcgccaaacgagtaggataagaggtgttcagtatggactggatcatgaagcg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cccaagaatcgccaaacgagtaggataagaggtgttcagtatggactggatcatgaagcg 580
Query: 406 gtaattgtttaatcgttatttcaaatgacgtttcaacgtctggatgaacgtccagctggt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gtaattgtttaatcgttatttcaaatgacgtttcaacgtctggatgaacgtccagctggt 520
Query: 466 gatgattacaagagaagttaccaaagaataaccctttatgataaccgaataaaagaaggg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gatgattacaagagaagttaccaaagaataaccctttatgataaccgaataaaagaaggg 460
Query: 526 aaagagccaaaaagaaatggaaaaacttgacaaatctagtcttcttcctcttaccgtcgt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaagagccaaaaagaaatggaaaaacttgacaaatctagtcttcttcctcttaccgtcgt 400
Query: 586 tcccactctcattcttttctacatcgtacttccagtaccctgtgtccttttcagcatcaa 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tcccactctcattcttttctacatcgtacttccagtaccctgtgtccttttcagcatcaa 340
Query: 646 tcgattctatgtaagcaggaggttcccctgcatcagtagactttggttttttatcctcgc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tcgattctatgtaagcaggaggttcccctgcatcagtagactttggttttttatcctcgc 280
Query: 706 aaaccatttggttccatatattcatctcattccccttagtacccatatctaccaacactt 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaaccatttggttccatatattcatctcattccccttagtacccatatctaccaacactt 220
Query: 766 caattgcttgtcctgggtgctacaaggtgcgtctcttccctgtctcccctctgncatata 825
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 219 caattgcttgtcctgggtgctacaaggtgcgtctcttccctgtctcccctctgcaatata 160
Query: 826 catggnatatttacttccatggctatantaagttctataataataa 871
||||| || ||||| |||||||||| ||||||||||||||||||
Sbjct: 159 catggataatctactttcatggctata-taagttctataataataa 115
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7483
Number of Sequences: 1807
Number of extensions: 7483
Number of successful extensions: 206
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)