BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF05FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 1524 0.0
>3x_Contig1529
Length = 11812
Score = 1524 bits (769), Expect = 0.0
Identities = 808/816 (99%), Gaps = 4/816 (0%)
Strand = Plus / Plus
Query: 86 tgacaatgaaatgcagcatatgactaacactattgaaagtccattgactattgggagctt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2013 tgacaatgaaatgcagcatatgactaacactattgaaagtccattgactattgggagctt 2072
Query: 146 ggcaaaacacatcctaacaataaaacttcaactaaggaaaatacagcctcttttcttacc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2073 ggcaaaacacatcctaacaataaaacttcaactaaggaaaatacagcctcttttcttacc 2132
Query: 206 tttagagcgagcactacacaaactcgggttaaatatacgacattactcacttctcgtaca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2133 tttagagcgagcactacacaaactcgggttaaatatacgacattactcacttctcgtaca 2192
Query: 266 atggctggtcaccattgttggatataaattatattctgagttgaacgatctaattagaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2193 atggctggtcaccattgttggatataaattatattctgagttgaacgatctaattagaag 2252
Query: 326 agggtttgaaattgaggttgagacaagatccatatcgaatgaccagttttatgaggtttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2253 agggtttgaaattgaggttgagacaagatccatatcgaatgaccagttttatgaggtttg 2312
Query: 386 caagttattttcagacttaggatttgattcacattatcatcattttttggatccgatatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 caagttattttcagacttaggatttgattcacattatcatcattttttggatccgatatc 2372
Query: 446 cctacctaagaacaacgatgttaatccacgatttatcttatctattctcgagggcttggt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 cctacctaagaacaacgatgttaatccacgatttatcttatctattctcgagggcttggt 2432
Query: 506 attaaccttcaaaacccaattgcaagtacagtcagatattaaggactttgaagcggaagc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 attaaccttcaaaacccaattgcaagtacagtcagatattaaggactttgaagcggaagc 2492
Query: 566 ttataccttcatgaattatttgcacaacgtgactctccaaatatatcccgaagaagtttt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 ttataccttcatgaattatttgcacaacgtgactctccaaatatatcccgaagaagtttt 2552
Query: 626 tgcagtgactcgtgccggtttttttgctgtatttgctgacgttgatttctacaaagcttc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 tgcagtgactcgtgccggtttttttgctgtatttgctgacgttgatttctacaaagcttc 2612
Query: 686 gatctcacagaaactcggttcatcacaaccgctcaattctcagcgtatcagctataatat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2613 gatctcacagaaactcggttcatcacaaccgctcaattctcagcgtatcagctataatat 2672
Query: 746 atgtggtttacaaagtgttttgaccgaaaa-gatatactatctgctaaccctcg-aatta 803
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 2673 atgtggtttacaaagtgttttgaccgaaaaggatatactatctgctaa-cctcgaaatta 2731
Query: 804 ctacgaagtgggtacaagatttgactngagttgggcctaattaccaaccgcctcttgatc 863
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 2732 ctacgaagtgggtacaagatttgactgaggttgggcctaattacc-accgcctcttgatc 2790
Query: 864 cgaatgatggatttcattcttcaacagcgccagcct 899
|||||||||||||||||||||||||||||| |||||
Sbjct: 2791 cgaatgatggatttcattcttcaacagcgcaagcct 2826
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5658
Number of Sequences: 1807
Number of extensions: 5658
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)