BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF05RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1524 1306 0.0
>3x_Contig1524
Length = 11623
Score = 1306 bits (659), Expect = 0.0
Identities = 709/722 (98%), Gaps = 4/722 (0%)
Strand = Plus / Minus
Query: 192 agaagaatcctttgatctcacgtcgattgctagtaaaccaaatcgcgcacaatccacaac 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11623 agaagaatcctttgatctcacgtcgattgctagtaaaccaaatcgcgcacaatccacaac 11564
Query: 252 tctgagagagaaatatcatctagaaaaacaggcaactaatgacattttcgaggaagacgt 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11563 tctgagagagaaatatcatctagaaaaacaggcaactaatgacattttcgaggaagacgt 11504
Query: 312 tgaaaacttgaatccagagaataacaaatacctgttttccccagacactgatagcataga 371
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11503 tgaaaacttgaatccagagaataaaaaatacctgttttccccagacactgatagcataga 11444
Query: 372 ttttgcatccccagaaaagaacctcgacgatttaaaacaacagtttattgaccagtcaac 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11443 ttttgcatccccagaaaagaacctcgacgatttaaaacaacagtttattgaccagtcaac 11384
Query: 432 tgatgagcaaacgtcgttagatgaagaggagattgctactcaggataatgaaaataaaga 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11383 tgatgagcaaacgtcgttagatgaagaggagattgctactcaggataatgaaaataaaga 11324
Query: 492 tcatggaattgataaaaagaaactagaggacattatgaatggtattgacgacacagctga 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11323 tcatggaattgataaaaagaaactagaggacattatgaatggtattgacgacacagctga 11264
Query: 552 tacttctatggatcctgttaatcttgctttaatgaaattagaagggacgtatgataaagg 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11263 tacttctatggatcctgttaatcttgctttaatgaaattagaagggacgtatgataaagg 11204
Query: 612 ggaaaaggaaatagatgataaaagtccatcaattaacagcgaattagcccgggaagttga 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11203 ggaaaaggaaatagatgataaaagtccatcaattaacagcgaattagcccgggaagttga 11144
Query: 672 aaatttccaaatcgtacaaactgcagctcttcctgaaagcgctcgcaaaaggcaatccat 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11143 aaatttccaaatcgtacaaactgcagctcttcctgaaagcgctcgcaaaaggcaatccat 11084
Query: 732 gttcatacagagaagacgcaacacaatgatcgattntagcgttcgtgattcactcattga 791
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 11083 gttcatacagagaagacgcaacacaatgatcgattttagcgttcgtgattcactcattga 11024
Query: 792 ccaagactcctnctgcaccagattggaaaatactgatgaacaaattcgntatttggntaa 851
| ||||||||| |||||||||||||||||||||||||||||||||||| |||| | |||
Sbjct: 11023 caaagactcctcctgcaccagattggaaaatactgatgaacaaattcgtaattt-gttaa 10965
Query: 852 accagtacacattnactggattcaaggcttaaaat-gacattttagagc-acatatcccg 909
||||||||||||| ||| ||||||||||||||||| |||| |||||||| ||||||||||
Sbjct: 10964 accagtacacattaact-gattcaaggcttaaaatagacaatttagagcaacatatcccg 10906
Query: 910 tt 911
||
Sbjct: 10905 tt 10904
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6859
Number of Sequences: 1807
Number of extensions: 6859
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)