BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF06FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig883 1340 0.0
3x_Contig1745 547 e-155
3x_Contig1806 472 e-133
>3x_Contig883
Length = 3346
Score = 1340 bits (676), Expect = 0.0
Identities = 726/736 (98%), Gaps = 5/736 (0%)
Strand = Plus / Minus
Query: 86 ccacagtacagaatatcattggtgaatcgtcagattagatcacgtggatttaaattcgaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 ccacagtacagaatatcattggtgaatcgtcagattagatcacgtggatttaaattcgaa 1324
Query: 146 gactaataaatatcgataatgaacatacagaagataattagacatcattaaaattgcaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1323 gactaataaatatcgataatgaacatacagaagataattagacatcattaaaattgcaaa 1264
Query: 206 gaacatggtaaaaatacaaattgcggggtcgtaaaaaaacctagatactcaacatgcgat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 gaacatggtaaaaatacaaattgcggggtcgtaaaaaaacctagatactcaacatgcgat 1204
Query: 266 aatgggaatttgttggacaaatttatcatatttcattaagcattattacaagagaatact 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 aatgggaatttgttggacaaatttatcatatttcattaagcattattacaagagaatact 1144
Query: 326 tgcaagatgcgcggtattgaacgtaaaaccttagttattaggatgaggtttctgttcttt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 tgcaagatgcgcggtattgaacgtaaaaccttagttattaggatgaggtttctgttcttt 1084
Query: 386 ctagatgttcaacagataacctcttaccatcttctaacataacctgggatgtcacttctg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 ctagatgttcaacagataacctcttaccatcttctaacataacctgggatgtcacttctg 1024
Query: 446 ggagttgagtgataccatctccaaacacctcgtcaacttcttccaaagatcttccagaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 ggagttgagtgataccatctccaaacacctcgtcaacttcttccaaagatcttccagaag 964
Query: 506 tttcaacgaaagtgaaataacagacaacaatctcaacggctaagaaacaacaataaaaga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 tttcaacgaaagtgaaataacagacaacaatctcaacggctaagaaacaacaataaaaga 904
Query: 566 tgtagtatttccattcaatagcatccattgcaattgagttaacaaacccgttgaaaataa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 tgtagtatttccattcaatagcatccattgcaattgagttaacaaacccgttgaaaataa 844
Query: 626 ctggcagactaatggccaactggaaaattgtaagccctttacctctcaaagtgtaaggta 685
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ctgcaagactaatggccaactggaaaattgtaagccctttacctctcaaagtgtaaggta 784
Query: 686 aaatttcagttgtgtagaggaatgggtaaccgttgaatccaaagttgt-agaaagat-at 743
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 783 aaatttcagttgtgtagaggaatgggtaaccgttgaatccaaagttgtaagaaagataat 724
Query: 744 attaagagatcattgccaagacaccatttgctagaga-ttatcctcgaaa-tacgttttt 801
|| | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 723 ataagaagatcattgccaagacaccatttgctagagatttatcctcgaaattacgttttt 664
Query: 802 gg-tttcagcagataa 816
|| |||||||||||||
Sbjct: 663 ggttttcagcagataa 648
>3x_Contig1745
Length = 19830
Score = 547 bits (276), Expect = e-155
Identities = 417/460 (90%), Gaps = 3/460 (0%)
Strand = Plus / Minus
Query: 337 cggtattgaacgtaaaaccttagttattaggatgaggtttctgttctttctagatgttca 396
||||||||||||||| | || |||||| ||||||| || ||||||||||||| |||||||
Sbjct: 5330 cggtattgaacgtaagatctcagttatcaggatgacgtgtctgttctttctacatgttca 5271
Query: 397 acagataacctcttaccatcttctaacataacctgggatgtcacttctgggagttgagtg 456
||||| |||||||||||| |||||| ||||| ||||||||| |||||||| ||||| |||
Sbjct: 5270 acagacaacctcttaccagcttctagcataatctgggatgttacttctggaagttgggtg 5211
Query: 457 ataccatctccaaacacctcgtcaacttcttccaaagatcttccagaagtttcaacgaaa 516
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5210 ataccgtctccaaacacctcgtcaacttcttccaaagatcttcctgaagtttcaacgaaa 5151
Query: 517 gtgaaataacagacaacaatctcaacggctaagaaacaacaataaaagatgtagtatttc 576
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5150 gtgaaataacaaacaacgatctcaacagctaagaaacaacaataaaagatgtagtatttc 5091
Query: 577 cattcaatagcatccattgcaattgagttaacaaacccgttgaaaataactggcagacta 636
|||||||||||||||||||||| || || |||||||| ||||| ||||||| | |||
Sbjct: 5090 cattcaatagcatccattgcaactggattgacaaacccattgaatataactgaaatgcta 5031
Query: 637 atggccaactggaaaattgtaagccctttacctctcaaagtgtaaggtaaaatttcagtt 696
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 5030 atggccaactggaaaattgtaagccctttacctctcaaagtataaggtaatatttcagtt 4971
Query: 697 gtgtagaggaatgggtaaccgttgaatccaaagttgt-agaaagat-atattaagagatc 754
||||| || |||| ||||||||||||| ||||||| |||||||| |||| | |||||
Sbjct: 4970 gtgtaaagatttgggaaaccgttgaatccgaagttgtaagaaagataatataagaagatc 4911
Query: 755 attgccaagacaccatttgctagaga-ttatcctcgaaat 793
|||||||||||||||||||||||||| |||||||||||||
Sbjct: 4910 attgccaagacaccatttgctagagacttatcctcgaaat 4871
>3x_Contig1806
Length = 53694
Score = 472 bits (238), Expect = e-133
Identities = 416/470 (88%), Gaps = 4/470 (0%)
Strand = Plus / Plus
Query: 341 attgaacgtaaaaccttagttattaggatgaggtttctgttctttctagatgttcaacag 400
|||||||||||||||| || ||| ||||||| || |||||||||||| ||| |||||||
Sbjct: 46490 attgaacgtaaaacctcagctatcaggatgaagtgactgttctttctacatgctcaacag 46549
Query: 401 ataacctcttaccatcttctaacataacctgggatgtcacttctgggagttgagtgatac 460
| || | |||||||||||||| ||||| |||||||||| |||||| |||||| ||||||
Sbjct: 46550 acaatcgcttaccatcttctagcataatttgggatgtcatttctggaagttgaatgatac 46609
Query: 461 catctccaaacacctcgtcaacttcttccaaagatcttccagaagtttcaacgaaagtga 520
||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 46610 gatctccaaatacctcatcaacttcttccaaagatcttcctgaagtttcaacgaaagtga 46669
Query: 521 aataacagacaacaatctcaacggctaagaaacaacaataaaagatgtagtatttccatt 580
||||||| |||||||||||||| | |||||| || |||||||||||||||||||||||||
Sbjct: 46670 aataacaaacaacaatctcaacagataagaagcagcaataaaagatgtagtatttccatt 46729
Query: 581 caatagcatccattgcaattgagttaacaaacccgttgaaaataactggcagactaatgg 640
||||||||||||||||||||| || |||||||| ||||| ||||||| | ||||||||
Sbjct: 46730 caatagcatccattgcaattggattgacaaacccattgaatataactgaaatactaatgg 46789
Query: 641 ccaactggaaaattgtaagccctttacctctcaaagtgtaaggtaaaatttcagttgtgt 700
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 46790 ctaactggaaaattgtaagccctttacctctcaaagtgtaaggtaatatttcagttgtgt 46849
Query: 701 agaggaatgggtaaccgttgaatccaaagttgt-agaaagat-atattaagagatcattg 758
| || |||| |||||||||| || ||||||| |||||||| |||| | |||||||||
Sbjct: 46850 aaagatttgggaaaccgttgaacccgaagttgtaagaaagataatataagaagatcattg 46909
Query: 759 ccaagacaccatttgctagag-attatcctcgaaa-tacgtttttggttt 806
||||||| ||||||||||||| |||||||| ||| |||| |||||||||
Sbjct: 46910 ccaagactccatttgctagagtcttatcctcaaaattacgcttttggttt 46959
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7242
Number of Sequences: 1807
Number of extensions: 7242
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 3
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)