BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF06RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1643 0.0
>3x_Contig1746
Length = 26672
Score = 1643 bits (829), Expect = 0.0
Identities = 869/878 (98%), Gaps = 4/878 (0%)
Strand = Plus / Plus
Query: 47 tcctcagcaattcaatctcataccaatctttaatcaatctagactcatcaagagcataga 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13298 tcctcagcaattcaatctcataccaatctttaatcaatctagactcatcaagagcataga 13357
Query: 107 agagatcctcatcgttagagatgagcttcgatgaaacttgtggatcatggacattatcta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13358 agagatcctcatcgttagagatgagcttcgatgaaacttgtggatcatggacattatcta 13417
Query: 167 aatctgtagtatagataacataatccgagagtttagacttgaatacatttggtacatcgc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13418 aatctgtagtatagataacataatccgagagtttagacttgaatacatttggtacatcgc 13477
Query: 227 ttgcgtataagacttcatcaacatcgaatttcttagctgcagcttcaacactaattggga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13478 ttgcgtataagacttcatcaacatcgaatttcttagctgcagcttcaacactaattggga 13537
Query: 287 gaccgctccacatgatatcgtcttggtcaacatctggcaagaacaaggttaatttctcgt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13538 gaccgctccacatgatatcgtcttggtcaacatctggcaagaacaaggttaatttctcgt 13597
Query: 347 tcttcagatcaaataaaaccgaagaccccggaatgttacagccagatagatagtaaaaat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13598 tcttcagatcaaataaaaccgaagaccccggaatgttacagccagatagatagtaaaaat 13657
Query: 407 atctgttttgtctgaaggtcttcgtctgatcacaatacttgataggctcaatctcacctc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13658 atctgttttgtctgaaggtcttcgtctgatcacaatacttgataggctcaatctcacctc 13717
Query: 467 cagcaacgaaaatagcacacggtgaagagccggtatctagattcttctttttgtcaatga 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13718 cagcaacgaaaatagcacacggtgaagagccggtatctagattcttctttttgtcaatga 13777
Query: 527 aatgagatttaaccctcaaacaatgttctttggcaggatatttatgtcccacaagagcag 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13778 aatgagatttaaccctcaaacaatgttctttggcaggatatttatgtcccacaagagcag 13837
Query: 587 aaatcacgctcgtactgttgttactactcatttgcctagaaatctttccactggtttcaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13838 aaatcacgctcgtactgttgttactactcatttgcctagaaatctttccactggtttcaa 13897
Query: 647 atacgttggatattgcagagactttagaaacagtattagtcaacttcctccaaacaccgt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13898 atacgttggatattgcagagactttagaaacagtattagtcaacttcctccaaacaccgt 13957
Query: 707 acatcaacacagaggagncaccaatanaactagcggattgcttaaaatccatatgatcta 766
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 13958 acatcaacacagaggagcaaccaataaaactagcggattgcttaaaatccatatgatcta 14017
Query: 767 ctgccttgagtatatatatatatgtaacgaaatagggttgc-aataagtaaaaagaaaga 825
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 14018 ctgccttgagtatatatatatatgtaacgaaata-ggttgcaaataagtaaaaagaaaga 14076
Query: 826 aaggacaacagcnggatagacagatagatacagttgtagcatg-aaaaaaatgtgtcaaa 884
|||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 14077 aaggacaacagcaggatagacagatagatacagtagtagcatgaaaaaaaatgtgtcaaa 14136
Query: 885 cttcagtcggaattgac-actagtttgacttcaatata 921
||||||||||||||||| ||||||||||||||||||||
Sbjct: 14137 cttcagtcggaattgacaactagtttgacttcaatata 14174
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9782
Number of Sequences: 1807
Number of extensions: 9782
Number of successful extensions: 147
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)