BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF07FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig897 1279 0.0
>3x_Contig897
Length = 3942
Score = 1279 bits (645), Expect = 0.0
Identities = 749/775 (96%), Gaps = 8/775 (1%)
Strand = Plus / Minus
Query: 86 ttctctctgtgtattcgcactctcctcctgttagctaagagaatataaaaggtgatttgc 145
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3881 ttctctctttttattcgcactctcctcctgttagctaagagaatataaaaggtgatttgc 3822
Query: 146 tatttgatcttaccaaatacatacttaacttatatatacatatatataggcacgttatta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3821 tatttgatcttaccaaatacatacttaacttatatatacatatatataggcacgttatta 3762
Query: 206 tccaagtgaagtaaaattagaatttatgaaatataatacattaatgacaccacatgccag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3761 tccaagtgaagtaaaattagaatttatgaaatataatacattaatgacaccacatgccag 3702
Query: 266 cggaaatcacctcctctatctctgataaggaaatctgcttgaggaacaaggtgagatttc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3701 cggaaatcacctcctctatctctgataaggaaatctgcttgaggaacaaggtgagatttc 3642
Query: 326 ctttcgcaaaaagataggcatgctgtctccacggcactgtggaaatttccattacaaaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3641 ctttcgcaaaaagataggcatgctgtctccacggcactgtggaaatttccattacaaaaa 3582
Query: 386 tgaacggataaccaaaattgaatcatctttaggctgaaccctttcagcccattaattctg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3581 tgaacggataaccaaaattgaatcatctttaggctgaaccctttcagcccattaattctg 3522
Query: 446 attgcacgtgcttcggcaaatgtcaatggtcatataggaattttattaatttggtgtaat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3521 attgcacgtgcttcggcaaatgtcaatggtcatataggaattttattaatttggtgtaat 3462
Query: 506 taatatcaatcctgcgctgcaacgatttctggcattcctcacagccgcatgttgaggcag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3461 taatatcaatcctgcgctgcaacgatttctggcattcctcacagccgcatgttgaggcag 3402
Query: 566 cacgcacgggttctctcaattttttattatttttttaaattggattttgccacgaaggca 625
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 3401 cacgcacgggttctctcaattttttattatttttttaaattggatttggccacgagggca 3342
Query: 626 tggtcagtagccatgctcggngtaatcttaaatttgacatttattccagaagggaaaaan 685
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 3341 tggtcagtagccatgctcggggtaatcttaaatttgacatttattccagaa-ggaaaaaa 3283
Query: 686 naacaaaaggcacantctgtcgcaaaatccgggtaatggtaaagagggcttaacgaaatt 745
||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 3282 aaacaaaaggcaca-tctgtcgc-aaatccgggtaatggtaaaga-ggcttaacgaaatt 3226
Query: 746 tttccgtgatatacaccaagatacctattaanagggcatttttactgggaacaaat-gna 804
|||||||||||||||| |||||||||||||| |||||| ||||||| ||||||||| | |
Sbjct: 3225 tttccgtgatatacacaaagatacctattaaaagggca-ttttact-ggaacaaatagaa 3168
Query: 805 aagctgataaacttgcagaaaagaaagc-attctnctggttgaaatagggtctta 858
|||||||||||| |||| |||| |||| || || ||||||||||| |||||||
Sbjct: 3167 aagctgataaacatgcaagaaaggaagcaatcctcctggttgaaatcaggtctta 3113
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6926
Number of Sequences: 1807
Number of extensions: 6926
Number of successful extensions: 132
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)