BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF07RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1190 1170 0.0
3x_Contig1410 141 3e-33
>3x_Contig1190
Length = 5329
Score = 1170 bits (590), Expect = 0.0
Identities = 602/605 (99%), Gaps = 1/605 (0%)
Strand = Plus / Plus
Query: 47 aagagttcgacactagaatactagataaggttattgaatacatggaatactcgtataagt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4725 aagagttcgacactagaatactagataaggttattgaatacatggaatactcgtataagt 4784
Query: 107 acaaggatgctgatgacgacgttgaagttcctgagtt-aacgtttctcctgatatttcgt 165
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4785 acaaggatgctgatgacgacgttgaagttcctgagttcaacgtttctcctgatatttcgt 4844
Query: 166 tagatttattattagctgctgattatttgggtatatgatgcgatactaaaggctagatag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4845 tagatttattattagctgctgattatttgggtatatgatgcgatactaaaggctagatag 4904
Query: 226 aacaaaacacagggttgaaatgtgataatagtcatggcaatttcataaagctcactctct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4905 aacaaaacacagggttgaaatgtgataatagtcatggcaatttcataaagctcactctct 4964
Query: 286 ttgttttcaccttagtcgacatcactggacaataaggacatttgaaattacaagtcccgt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4965 ttgttttcaccttagtcgacatcactggacaataaggacatttgaaattacaagtcccgt 5024
Query: 346 tcttgcttaatttatccagacttttcttggaaagaacgtgatgacagggcaaagaataag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5025 tcttgcttaatttatccagacttttcttggaaagaacgtgatgacagggcaaagaataag 5084
Query: 406 gtgggttttccttcgtagtctcttctttcaataccggacatatgaatatagggtgatagt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5085 gtgggttttccttcgtagtctcttctttcaataccggacatatgaatatagggtgatagt 5144
Query: 466 tcgacaagaagggtggcagcttgacgtgaaacggtaattcatcagcagtggaccagtcca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5145 tcgacaagaagggtggcagcttgacgtgaaacggtaattcatcagcagtggaccagtcca 5204
Query: 526 catgagatactttcctaatggcttcatatttagtgaacacttggaaaccgataaccccac 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5205 catgagatactttcctaatggcttcatatttagtgaacacttggaaaccgataaccccac 5264
Query: 586 ttagcacgancaggaataacgctgaatgtaaaggaagtttgttctgtagacaatactgtt 645
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5265 ttagcacgacaaggaataacgctgaatgtaaaggaagtttgttctgtagacaatactgtt 5324
Query: 646 tcgtg 650
|||||
Sbjct: 5325 tcgtg 5329
>3x_Contig1410
Length = 7640
Score = 141 bits (71), Expect = 3e-33
Identities = 127/138 (92%), Gaps = 6/138 (4%)
Strand = Plus / Minus
Query: 757 gttgagaacttttactcactgtcgacgccaagttcgtctgt-tataccagtagcacttcc 815
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 7636 gttgagaacttttactcactgtcgacgccaagttcgtctgtatatacaagtagcac-tcc 7578
Query: 816 ata-gtttattttcagacaacaatgacatcgccgtttagggtaagtaaattggaaatgaa 874
||| ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct: 7577 ataggtttattttcagacaacaatgacatcg-cgttta-ggtaatgtaattggaaatgaa 7520
Query: 875 gtactttccaggtnatta 892
|||| |||||||| ||||
Sbjct: 7519 gtac-ttccaggttatta 7503
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5592
Number of Sequences: 1807
Number of extensions: 5592
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)