BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF08FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1592 1394 0.0
>3x_Contig1592
Length = 12307
Score = 1394 bits (703), Expect = 0.0
Identities = 803/827 (97%), Gaps = 9/827 (1%)
Strand = Plus / Minus
Query: 86 tgattaatgaggaaccgtcgatgcctctctgtcatgatcctgcagccaatgctggggctt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3133 tgattaatgaggaaccgtcgatgcctctctgtcatgatcctgcagccaatgctggggctt 3074
Query: 146 cggtttccgaaaccgataagctgtcaaatcaagaagaaatagtacaggatattattcctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3073 cggtttccgaaaccgataagctgtcaaatcaagaagaaatagtacaggatattattcctt 3014
Query: 206 ctaatgacggtaaacttttgaagtgttccgaagtctgggatcgtattactgcacatccac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3013 ctaatgacggtaaacttttgaagtgttccgaagtctgggatcgtattactgcacatccac 2954
Query: 266 gttactcggacctagatatcgatggtctatgtttggagctacggacaaaggctaaatgtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2953 gttactcggacctagatatcgatggtctatgtttggagctacggacaaaggctaaatgtt 2894
Query: 326 cggaaaaaggtgtcgttgtcaatgcggaggatgttcaaaaggctttgatttcgcatatgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2893 cggaaaaaggtgtcgttgtcaatgcggaggatgttcaaaaggctttgatttcgcatatgc 2834
Query: 386 aatgaataatcatttcacttggtttcgcaccacaatactgttacgttcaaattaacggtt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2833 aatgaataatcatttcacttggtttcgcaccacaatactgttacgttcaaattaacggtt 2774
Query: 446 tcaattcttttaacgagtttccgatgtctttctttttgaagtagaggacatatctttttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2773 tcaattcttttaacgagtttccgatgtctttctttttgaagtagaggacatatctttttc 2714
Query: 506 gaatggataattacgaactcctcattcctgaagaaacttaaattacatggatcacgaata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2713 gaatggataattacgaactcctcattcctgaagaaacttaaattacatggatcacgaata 2654
Query: 566 caaagacaaaataaccaaattttcagtcttaaaagacttaataaaactttcagaattatc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2653 caaagacaaaataaccaaattttcagtcttaaaagacttaataaaactttcagaattatc 2594
Query: 626 cctcttatattgagcatgttcgaacttttttcttntgtctcccttttatcatcgatcaat 685
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2593 cctcttatattgagcatgttcgaacttttttcttttgtctcccttttatcatcgatcaat 2534
Query: 686 aaaacgcttattctactttggttttttccttttactataatggttttcaaccaatttntc 745
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 2533 aaaacgcttattctactttggttttttccttttactataatgtttttcaaccaattt-tc 2475
Query: 746 actttcaaatttntttacactacctttttctgtataaatccattctttcccgtaatctaa 805
|||||||||||| ||||||||||||||| ||||||||||||| || | |||||||| |
Sbjct: 2474 actttcaaatttttttacactaccttttcttgtataaatccatcctcccacgtaatct-a 2416
Query: 806 attaatc-acttataataacacaccggtccatctggaaattggtgcgaaattcaataata 864
||||||| ||||||||||||||||| ||||||||| ||||| |||||||||||||||
Sbjct: 2415 attaatcaacttataataacacacc-gtccatctg--aattgttgcgaaattcaataaat 2359
Query: 865 tatcttttatcagaataattaaaggnctgattgggtctgttatttat 911
|||| ||||||||| |||||| | | |||||| ||||||||||||||
Sbjct: 2358 tatc-tttatcagattaattata-gtctgatt-ggtctgttatttat 2315
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6971
Number of Sequences: 1807
Number of extensions: 6971
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)