BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF08RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig740 1693 0.0
>3x_Contig740
Length = 2091
Score = 1693 bits (854), Expect = 0.0
Identities = 861/862 (99%), Gaps = 1/862 (0%)
Strand = Plus / Minus
Query: 47 ctaaaactgataacggtactcacgttgtcttcaattgtactgggctaggctccaagaagt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2083 ctaaaactgataacggtactcacgttgtcttcaattgtactgggctaggctccaagaagt 2024
Query: 107 tgagtggtgttgctgatcataacttgtaccctactagaggccaagtggccgtaatcagtg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 tgagtggtgttgctgatcataacttgtaccctactagaggccaagtggccgtaatcagtg 1964
Query: 167 ctcctcacattgctgagagttgtttgagatatggtaaagattatgtaacttacattattc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 ctcctcacattgctgagagttgtttgagatatggtaaagattatgtaacttacattattc 1904
Query: 227 caaggcctggcaaagtgcatgaattagttcttggaggtttcttacaagttgataattgga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 caaggcctggcaaagtgcatgaattagttcttggaggtttcttacaagttgataattgga 1844
Query: 287 atgcacaggacacttccaaggaagaaactgatgatatcttgaaaagaaccacaactttac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 atgcacaggacacttccaaggaagaaactgatgatatcttgaaaagaaccacaactttac 1784
Query: 347 tacccaagattggtaatccagagaatttaccaattttaaagatagcggctgggcttcgcc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 tacccaagattggtaatccagagaatttaccaattttaaagatagcggctgggcttcgcc 1724
Query: 407 caagcagatatggtggtcctcgtgtcgagaaagagattaaggaagaaagcgaacacctag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 caagcagatatggtggtcctcgtgtcgagaaagagattaaggaagaaagcgaacacctag 1664
Query: 467 ttgtggttcataactatggagcctccgggtatggttaccaatctggtctcggtatggcct 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1663 ttgtggttcataactatggagcctccgggtatggttaccaatctggtctcggtatggcct 1604
Query: 527 tcaaggcggtctcattagcttttgataagcaaagacccagcaaattatgaagtgaatagt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1603 tcaaggcggtctcattagcttttgataagcaaagacccagcaaattatgaagtgaatagt 1544
Query: 587 ttacgtatctatgattatgtcaaagagtataaaaacattcaaaacaaattatcttttcat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1543 ttacgtatctatgattatgtcaaagagtataaaaacattcaaaacaaattatcttttcat 1484
Query: 647 tgtcaaatagcgttcgttgtatgttttaaatccaaacattgagtcgcaatccggcatgca 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1483 tgtcaaatagcgttcgttgtatgttttaaatccaaacattgagtcgcaatccggcatgca 1424
Query: 707 cgagcccgcatataatcgcgtcttaccttaactcgctggtgtttattatttgcaaacgac 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1423 cgagcccgcatataatcgcgtcttaccttaactcgctggtgtttattatttgcaaacgac 1364
Query: 767 ttttctatcacgtgaaacctcgataagatatgaattccgttttggctgcattcttctgag 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1363 ttttctatcacgtgaaacctcgataagatatgaattccgttttggctgcattcttctgag 1304
Query: 827 aaatataaatgtatatatctaattaggctcagaaataagatccgaatcttagt-acaccc 885
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1303 aaatataaatgtatatatctaattaggctcagaaataagatccgaatcttagtcacaccc 1244
Query: 886 ccgctaggaacgacttttgatt 907
||||||||||||||||||||||
Sbjct: 1243 ccgctaggaacgacttttgatt 1222
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6083
Number of Sequences: 1807
Number of extensions: 6083
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)