BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF09FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1364 0.0
>3x_Contig1698
Length = 21001
Score = 1364 bits (688), Expect = 0.0
Identities = 719/727 (98%), Gaps = 2/727 (0%)
Strand = Plus / Plus
Query: 86 tgatcagtggaataaattggagttttcaaacgatggtaaatatttgttgcttgcgtcgtc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3666 tgatcagtggaataaattggagttttcaaacgatggtaaatatttgttgcttgcgtcgtc 3725
Query: 146 cgctggaaaacatttgatcatggattccttcgatggtacacagttatttgaattatcagg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3726 cgctggaaaacatttgatcatggattccttcgatggtacacagttatttgaattatcagg 3785
Query: 206 aactaaacctttcccattgagagagttcatggattctggatccgcaacgttcactccaga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3786 aactaaacctttcccattgagagagttcatggattctggatccgcaacgttcactccaga 3845
Query: 266 tggacgcattacattgggaactgattacactgggaagatcgcgatatggaaccacgcaga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3846 tggacgcattacattgggaactgattacactgggaagatcgcgatatggaaccacgcaga 3905
Query: 326 cttcatcagtggtaggacgctcaaacctcaaggatttattaacgccgcaccaaatacatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3906 cttcatcagtggtaggacgctcaaacctcaaggatttattaacgccgcaccaaatacatg 3965
Query: 386 tcccagaactattgcattcaatcctaaatatagcatgtttgtcactgcagatgaaactgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3966 tcccagaactattgcattcaatcctaaatatagcatgtttgtcactgcagatgaaactgt 4025
Query: 446 agatttctacgtatataacgaatgaattatactgggatctggatatatgacttcgaagcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4026 agatttctacgtatataacgaatgaattatactgggatctggatatatgacttcgaagcc 4085
Query: 506 agactctacccagagcacccatctatttaggaatggcactcgacatctcgataacatttc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4086 agactctacccagagcacccatctatttaggaatggcactcgacatctcgataacatttc 4145
Query: 566 catgttaccgatgacacaaagctgccttttaggtctggtcatcgcgacatttaatcttct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4146 catgttaccgatgacacaaagctgccttttaggtctggtcatcgcgacatttaatcttct 4205
Query: 626 ttcatctttcaagaacccaacctcgaaattctcgttacttcttactaaagataggatgat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4206 ttcatctttcaagaacccaacctcgaaattctcgttacttcttactaaagataggatgat 4265
Query: 686 gcactccttttctctaccttngaatccgtctacggtagatatcttaattgcttgatgctt 745
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 4266 gcactccttttctctaccttgaaatccgtctacggtagatatctcaattgcttgatgctt 4325
Query: 746 ttcatggatgagtttttttcaacagcgatacttgttgattattacggggagatcacaccc 805
|||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 4326 ttcatggatgag-ttttttcaacagcgatacttgtgaatta-tacggggagatcacacca 4383
Query: 806 atacttt 812
|||||||
Sbjct: 4384 atacttt 4390
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5965
Number of Sequences: 1807
Number of extensions: 5965
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)