BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF10FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1296 0.0
3x_Contig38 912 0.0
>3x_Contig1517
Length = 8289
Score = 1296 bits (654), Expect = 0.0
Identities = 789/820 (96%), Gaps = 12/820 (1%)
Strand = Plus / Plus
Query: 87 ctaccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4616 ctaccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgat 4675
Query: 147 cgaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaacta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4676 cgaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaacta 4735
Query: 207 catcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4736 catcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttat 4795
Query: 267 gtttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatatta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4796 gtttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatatta 4855
Query: 327 gccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctcttcatct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4856 gccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctcttcatct 4915
Query: 387 tgaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4916 tgaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagc 4975
Query: 447 agatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4976 agatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttat 5035
Query: 507 ggccaaccgagaactttctggaagcttaaaatgaagatcattagaaatgtttgtaaattc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5036 ggccaaccgagaactttctggaagcttaaaatgaagatcattagaaatgtttgtaaattc 5095
Query: 567 acccgttaagaaagtttcgtagatgaagctgatactacaggtactggttatcnttttctt 626
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5096 acccgttaagaaagtttcgtagatgaagctgatactacaggtactggttatctttttctt 5155
Query: 627 gttagatatctcttgatcgagccttcaatattgcctttaatatggcttttttcttttgtt 686
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5156 gttagatatctcttgatcgagccttcaatattgcctttaatatgctttttttcttttgtt 5215
Query: 687 tcttctaagaga-atgtatttgatcttc-tcataattaa-ggtttccgatgtc-ttttca 742
|||||||||||| ||||||||||||||| |||||||||| |||||| ||||| ||||||
Sbjct: 5216 tcttctaagagatatgtatttgatcttcttcataattaagggtttcgaatgtctttttca 5275
Query: 743 tactgaaacatttagttcaca-ccacttggtttaccttaaccacctttattagaaaaagt 801
||||||||||||||||||||| | |||||||||| ||| | || | |||| ||||||||
Sbjct: 5276 tactgaaacatttagttcacagcaacttggttta-cttcaacaacgttataagaaaaag- 5333
Query: 802 tttatgatttctatcactgcaagccttgtggattatcttttggacctgcttatgtattgg 861
||||||||||||||||||||||| |||||| || ||| |||||||||||| ||||| |||
Sbjct: 5334 tttatgatttctatcactgcaag-cttgtgaatcatc-tttggacctgctcatgta-tgg 5390
Query: 862 caattgaactttttttcccttcctcccccattttctaatg 901
||||||| || | || || | ||||||||||||||||||
Sbjct: 5391 caattgagctatgtt--ccatactcccccattttctaatg 5428
>3x_Contig38
Length = 925
Score = 912 bits (460), Expect = 0.0
Identities = 485/495 (97%), Gaps = 10/495 (2%)
Strand = Plus / Plus
Query: 87 ctaccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ctaccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgat 158
Query: 147 cgaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaacta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 cgaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaacta 218
Query: 207 catcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 catcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttat 278
Query: 267 gtttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatatta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatatta 338
Query: 327 gccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctcttcatct 386
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 339 gccgttgtttcttatagttatcg----------ggtcaggactccttgacctcttcatct 388
Query: 387 tgaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagc 448
Query: 447 agatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttat 508
Query: 507 ggccaaccgagaactttctggaagcttaaaatgaagatcattagaaatgtttgtaaattc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggccaaccgagaactttctggaagcttaaaatgaagatcattagaaatgtttgtaaattc 568
Query: 567 acccgttaagaaagt 581
|||||||||||||||
Sbjct: 569 acccgttaagaaagt 583
Score = 174 bits (88), Expect = 2e-43
Identities = 144/156 (92%), Gaps = 5/156 (3%)
Strand = Plus / Plus
Query: 626 tgttagatatctcttgatcgagccttcaatattgcctttaatatggcttttttcttttgt 685
||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 618 tgttagatatctcttgaacgagccttcaatattgcctttaatatgcttttcttcttttgt 677
Query: 686 ttcttctaagaga-atgtatttgatcttc-tcataattaa-ggtttccgatgtc-ttttc 741
||||||||||||| ||||||||||||||| |||||||||| |||||| ||||| |||||
Sbjct: 678 ttcttctaagagatatgtatttgatcttcttcataattaagggtttcgaatgtctttttc 737
Query: 742 atactgaaacatttagttcaca-ccacttggtttac 776
|||||||||||||||||||||| | |||||||||||
Sbjct: 738 atactgaaacatttagttcacagcaacttggtttac 773
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7049
Number of Sequences: 1807
Number of extensions: 7049
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 2
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)