BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF10RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1497 0.0
>3x_Contig1426
Length = 8319
Score = 1497 bits (755), Expect = 0.0
Identities = 829/845 (98%), Gaps = 7/845 (0%)
Strand = Plus / Plus
Query: 46 tcaagatcatctggaattcgctgccaattttctcgatcccattcggttagcatatcacac 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5161 tcaagatcatctggaattcgctgccaattttctcgatcccattcggttagcatatcacac 5220
Query: 106 atctcttttcttattttgttgatatcccttttctgacaattgcacccgtcattgacacta 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5221 atctcttttcttattttgttgatatcccttttctgacaattgcacccgtcattgacacta 5280
Query: 166 tcaggaggcagcaatggttctgaatcaagtccagggtatgatatcaaagatgaagtcaac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5281 tcaggaggcagcaatggttctgaatcaagtccagggtatgatatcaaagatgaagtcaac 5340
Query: 226 gaagatctgaccataactttcttcttcgtttcaccgttcttcctctttggaagggatatc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5341 gaagatctgaccataactttcttcttcgtttcaccgttcttcctctttggaagggatatc 5400
Query: 286 ttttcatgctgctcaattaaatctacgcaataatctggcaaattcttcggtttgtaatcg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5401 ttttcatgctgctcaattaaatctacgcaataatctggcaaattcttcggtttgtaatcg 5460
Query: 346 ttgacaagctttatcctccagtaaactgaccaatgaagttcgccatattcaggtatattc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5461 ttgacaagctttatcctccagtaaactgaccaatgaagttcgccatattcaggtatattc 5520
Query: 406 cgtcttctaccaaaatttggcacgtaaacgtttttccattcacacttttcgttttcgatt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5521 cgtcttctaccaaaatttggcacgtaaacgtttttccattcacacttttcgttttcgatt 5580
Query: 466 cttattcctattggaatcaattcagcaatccaccaaaaaatcaccctaaagatactcaca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5581 cttattcctattggaatcaattcagcaatccaccaaaaaatcaccctaaagatactcaca 5640
Query: 526 tttccacttccatcattttttttttgacgaccgatgtccttccctggttcatcagtatca 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5641 tttccacttccatcattttttttttgacgaccgatgtccttccctggttcatcagtatca 5700
Query: 586 aaaccttgctcaagatcagaacaactagatggtgattccgttttccagttaaacgttctg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5701 aaaccttgctcaagatcagaacaactagatggtgattccgttttccagttaaacgttctg 5760
Query: 646 aaagtaacgttctctgntttatgacgccacggtaaccaacttctctttgatggcagtttg 705
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5761 aagtaaacgttctctgttttatgacgccacggtaaccaacttctctttgatggcagtttg 5820
Query: 706 aagccgtggtatctattaatttgatcttcatcatattcattagtctctttttttgtgaaa 765
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5821 aagccgtggtatctattaatttgatcttcatcatattcattagtctc-ttttttgtgaaa 5879
Query: 766 tgggtttttcatagtaagattgcttctttttgaaactcaaaagaatcgtgcgatgctggc 825
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
Sbjct: 5880 tgggtttttcatagtaagattgc-tctttttgaaactcaaaag-atcgtgcgatgct-ga 5936
Query: 826 cattaagcttnncagcagatgtattatttgcccagcaaattcagggatgattcctttttt 885
|| ||||||| ||||||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct: 5937 caataagctt-ccagcagatgta-tatttg-ccagcaaattcatggatgattcctttttt 5993
Query: 886 taaaa 890
||||
Sbjct: 5994 aaaaa 5998
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8940
Number of Sequences: 1807
Number of extensions: 8940
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)