BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF11RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1524 1679 0.0
>3x_Contig1524
Length = 11623
Score = 1679 bits (847), Expect = 0.0
Identities = 857/861 (99%)
Strand = Plus / Plus
Query: 45 tgtcatcctttgcttacacttatgaattaagaacttgttccaatacagtaaatgttcatc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9373 tgtcatcctttgcttacacttatgaattaagaacttgttccaatacagtaaatgttcatc 9432
Query: 105 gatctgtgctaatgcctttgtgtaattcttagatagtttcactctttcccacaatttagc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9433 gatctgtgctaatgcctttgtgtaattcttagatagtttcactctttcccacaatttagc 9492
Query: 165 aggcgtgtgagctctttccgcggtcttcatgtacaagtaaagtgttccgtccacgttctt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 aggcgtgtgagctctttccgcggtcttcatgtacaagtaaagtgttccgtccacgttctt 9552
Query: 225 tacagtggcatatttactatttgccaaaggacacgcttgtctcgaacataaacctgttac 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 tacagtggcatatttactatttgccaaaggacacgcttgtctcgaacataaacctgttac 9612
Query: 285 gttgtattcatttctacagaagttctgtcccttatcagttttgactttgtacgcacaaaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9613 gttgtattcatttctacagaagttctgtcccttatcagttttgactttgtacgcacaaaa 9672
Query: 345 gtgctggttgataacctgccaaatgatctcgtcagacatctgctaatgttcagtcaatcc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9673 gtgctggttgataacctgccaaatgatctcgtcagacatctgctaatgttcagtcaatcc 9732
Query: 405 tacagatactggtttatgcttagtatgagtttatttaaattggttatgactatcgctaag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9733 tacagatactggtttatgcttagtatgagtttatttaaattggttatgactatcgctaag 9792
Query: 465 tttacttgctattccgctagtcgctgcttctttcatttcatctcatctcatcgcatcgca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9793 tttacttgctattccgctagtcgctgcttctttcatttcatctcatctcatcgcatcgca 9852
Query: 525 tcgatatttttcagttctcaaaaattttcaggcagaaagagaaaaaagaaatggattact 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9853 tcgatatttttcagttctcaaaaattttcaggcagaaagagaaaaaagaaatggattact 9912
Query: 585 aaatttttagtcacatgaccaatgatattttattgttataatcggaaacttaatcaagag 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9913 aaatttttagtcacatgaccaatgatattttattgttataatcggaaacttaatcaagag 9972
Query: 645 tcggaatatgcatgattagatctaaagagattaaccttcattcaaatatgttcgaaaaaa 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9973 tcggaatatgcatgattagatctaaagagattaaccttcattcaaatatgttcgaaaaaa 10032
Query: 705 atgtggatgaaactatttgaaactgantaaatcgtgtgttgatatatatattatatgagg 764
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 10033 atgtggatgaaactatttgaaactgataaaatcgtgtgttgatatatatattatatgagg 10092
Query: 765 tgaaatgaactgagactaactagttctatgtcanatactttactcgacattaaagaatta 824
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 10093 tgaaatgaactgagactaactagttctatgtcaaatactttactcgacattaaagaatta 10152
Query: 825 aattggggatttatgtgaaattgaattgatttcgtcatgggacaatgatgtgatgtaaac 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10153 aattggggatttatgtgaaattgaattgatttcgtcatgggacaatgatgtgatgtaaac 10212
Query: 885 acacttgctttacaactcatg 905
|||||||||| ||||||||||
Sbjct: 10213 acacttgcttaacaactcatg 10233
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8149
Number of Sequences: 1807
Number of extensions: 8149
Number of successful extensions: 381
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)